Repository details
ORegAnno
Name of repository
ORegAnno
Additional name(s)
- Open regulatory annotation database
Repository URL
Subject(s)
Description
<<<!!!<<< 2017-06-02: We recently suffered a server failure and are working to bring the full ORegAnno website back online. In the meantime, you may download the complete database here: http://www.oreganno.org/dump/ ; Data are also available through UCSC Genome Browser (e.g., hg38 -> Regulation -> ORegAnno) https://genome.ucsc.edu/cgi-bin/hgTrackUi?hgsid=686342163_2it3aVMQVoXWn0wuCjkNOVX39wxy&c=chr1&g=oreganno >>>!!!>>> The Open REGulatory ANNOtation database (ORegAnno) is an open database for the curation of known regulatory elements from scientific literature. Annotation is collected from users worldwide for various biological assays and is automatically cross-referenced against PubMED, Entrez Gene, EnsEMBL, dbSNP, the eVOC: Cell type ontology, and the Taxonomy database, where appropriate, with information regarding the original experimentation performed (evidence). ORegAnno further provides an open validation process for all regulatory annotation in the public domain. Assigned validators receive notification of new records in the database and are able to cross-reference the citation to ensure record integrity. Validators have the ability to modify any record (deprecating the old record and creating a new one) if an error is found. Further, any contributor to the database can comment on any annotation by marking errors, or adding special reports into function as they see fit. These features of ORegAnno ensure that the collection is of the highest quality and uniquely provides a dynamic view of our changing understanding of gene regulation in the various genomes.
Content type(s)
Persistent identifier(s) of the repository
- RRID:SCR_007835
- RRID:nif-0000-03223
Repository type(s)
- disciplinary
Research data repository language(s)
- English
Data and/or service provider
- data provider
Institution name
Additional name(s)
- BC Cancer Agency, Research Centre
- BCGSC
Contact(s)
- oreganno@bcgsc.bc.ca
- obig@bcgsc.ca
Country
Type(s) of responsibility
- general
- technical
Type of institution
non-profit
Institution name
Additional name(s)
- CIHR
Country
Type(s) of responsibility
- funding
Type of institution
non-profit
Institution name
Country
Type(s) of responsibility
- funding
Type of institution
non-profit
Institution name
Additional name(s)
- MSFHR
Country
Type(s) of responsibility
- funding
Type of institution
non-profit
Institution name
Additional name(s)
- NSERC
Country
Type(s) of responsibility
- funding
Type of institution
non-profit
Policies (1)
Policy Name
Database access
Type of access to research data repository
open
Database licenses (1)
Database License
Data access (1)
Type of access to data
open
Data licenses (2)
Data upload (1)
Type of data upload
restricted
Data upload restriction type(s)
- registration
Persistent identifier system(s)
- none
Name of the repository software
- unknown
Data citation guideline
Enhanced Publication
unknown
Quality management
yes
Remarks
Entry date
2014-02-20
Last update
2024-02-21
Cite this re3data.org record:
re3data.org: ORegAnno; editing status 2024-02-21; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3DG70 last accessed: 2024-04-19- Current projects
- EOSC FAIR-IMPACT
- re3data COREF
-
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re3data.org
has waived all copyright and related or neighboring rights to
the database entries of re3data.org.
-
Except where otherwise noted, content on this site is licensed under a
Creative Commons Attribution 4.0 International License
.
- Cite this service: re3data.org - Registry of Research Data Repositories. https://doi.org/10.17616/R3D last accessed: 2024-04-19
