Repository details

InnateDB

Name of repository
InnateDB
Additional name(s)
  • A Knowlede Resource for Innate Immunity Interactions & Pathways
Repository URL
https://www.innatedb.com/
Subject(s)
Description
InnateDB is a publicly available database of the genes, proteins, experimentally-verified interactions and signaling pathways involved in the innate immune response of humans, mice and bovines to microbial infection. The database captures an improved coverage of the innate immunity interactome by integrating known interactions and pathways from major public databases together with manually-curated data into a centralised resource. The database can be mined as a knowledgebase or used with our integrated bioinformatics and visualization tools for the systems level analysis of the innate immune response.
Contact
  • innatedb-mail@sfu.ca
Content type(s)
Keyword(s)
Persistent identifier(s) of the repository
  • RRID:nif-0000-20808
  • RRID:SCR_006714
  • FAIRsharing_doi:10.25504/FAIRsharing.rb2drw
Repository size
27.172 curated interactions; 367.527 total inerations
Repository type(s)
  • disciplinary
Mission statement for designated community
https://www.innatedb.com/redirect.do?go=aboutIDB
Research data repository language(s)
  • English
Data and/or service provider
  • data provider
Institution name
AllerGen
Identifier(s)
  • ROR:048gf2b30
Country
Canada
Type(s) of responsibility
  • funding
Type of institution
non-profit
Institution name
European Molecular Biology Laboratory Australia
Additional name(s)
  • EMBL Australia
Identifier(s)
  • ROR:00yx5cw48
Country
Australia
Type(s) of responsibility
  • funding
Type of institution
non-profit
Institution name
European Molecular Biology Laboratory Australia, Lynn Group
Additional name(s)
  • EMBL Australia, Lynn
Country
Australia
Type(s) of responsibility
  • general
Type of institution
non-profit
Institution name
Flinders University
Identifier(s)
  • ROR:01kpzv902
  • RRID:SCR_012936
Country
Australia
Type(s) of responsibility
  • general
Type of institution
non-profit
Institution name
HUPO Proteomics Standards Initiative
Additional name(s)
  • PSI
Identifier(s)
  • RRID:SCR_003158
Country
Australia
Type(s) of responsibility
  • sponsoring
Type of institution
non-profit
Institution name
International Molecular Exchange Consortium
Additional name(s)
  • IMEx
Identifier(s)
  • RRID:SCR_002805
Country
International
Type(s) of responsibility
  • general
Type of institution
non-profit
Institution name
Simon Fraser University, Fiona Brinkman Laboratory
Additional name(s)
  • Brinkmann Lab
Contact(s)
  • innatedb-mail@sfu.ca
Country
Canada
Type(s) of responsibility
  • general
  • technical
Type of institution
non-profit
Institution name
South Australian Health & Medical Research Institute
Additional name(s)
  • SAHMRI
Identifier(s)
  • ROR:03e3kts03
Country
Australia
Type(s) of responsibility
  • general
Type of institution
non-profit
Institution name
University of British Columbia, R.E.W. Hancock Laboratory
Additional name(s)
  • Hancock Lab
Country
Canada
Type(s) of responsibility
  • general
Type of institution
non-profit

Policies (1)

Policy Name
IMEx Curation Rules

Database access

Type of access to research data repository
open

Data access (1)

Type of access to data
open

Data licenses (2)

DataLicense
Copyrights
DataLicense
CC

Data upload (1)

Type of data upload
restricted
Data upload restriction type(s)
  • registration

Data upload license (1)

Data upload license name
IMEx data submission
Name of the repository software
  • other
Versioning
yes
Data citation guideline
https://www.innatedb.com/
Enhanced Publication
unknown
Quality management
unknown

Application programming interfaces (1)

API type
other

Remarks

Remarks
InnateDB is active partner of the International Molcular Exchange Consortium (IMEx). Pathway data are from following databases: Kyoto encyclopedia of genes and genomes (KEGG), NCI-Nature Pathway Interaction Database (PID), Integrating Network Objects with Hierarchies (INOH) Pathway Database, NetPath and Reactome. A mirror of InnateDB.com hosted by the David Lynn Group in Australia is available at http://innatedb.sahmri.com.
Entry date
2014-03-31
Last update
2024-01-31
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Cite this re3data.org record:

re3data.org: InnateDB; editing status 2024-01-31; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R36S43 last accessed: 2024-04-16