Repository details
Ligand-Gated Ion Channel Database
Name of repository
Ligand-Gated Ion Channel Database
Additional name(s)
- LGICdb
- LGIC
Repository URL
Subject(s)
Description
The Ligand-Gated Ion Channel database provides access to information about transmembrane proteins that exist under different conformations, with three primary subfamilies: the cys-loop superfamily, the ATP gated channels superfamily, and the glutamate activated cationic channels superfamily. The development of the Ligand-Gated Ion Channel database was started in 1994, as part of Le Novère's work on the phylogeny of those receptors' subunits. It grew into a serious data resource, that served the community at large. However, it is not actively maintained anymore. In addition, bioinformatics technology evolved a lot over the last two decades, so that scientists can now generate quickly customised databases from trustworthy primary data resources. Therefore, we decided to officialy freeze the data resource. The resource will not disappear, and all the information and links will stay there. But people should not consider it as an up-to-date trustable resource. For any new work, they should consider using alternative sources, such as UniProt, Ensembl, Protein Databank etc.
Contact
- lenov@ebi.ac.uk
Content type(s)
Keyword(s)
Persistent identifier(s) of the repository
- RRID:nif-0000-00037
- RRID:SCR_002418
- FAIRsharing_doi:10.25504/FAIRsharing.hjybww
Repository size
554 entries
Repository type(s)
- disciplinary
Research data repository language(s)
- English
Data and/or service provider
- data provider
- service provider
Institution name
Contact(s)
- lenov@ebi.ac.uk
Country
Type(s) of responsibility
- general
Type of institution
non-profit
Policies (2)
Policy Name
Policy Name
Database access
Type of access to research data repository
open
Data access (1)
Type of access to data
open
Data licenses (1)
DataLicense
Data upload (1)
Type of data upload
restricted
Data upload restriction type(s)
- registration
Persistent identifier system(s)
- none
Name of the repository software
- unknown
Versioning
yes
Data citation guideline
Enhanced Publication
yes
Quality management
unknown
Remarks
Remarks
The LGIC database has been initially developed by Nicolas Le Novère within the team of Jean-Pierre Changeux at the Pasteur Institute, with the help of Catherine Letondal. It was further developed at the EMBL-EBI by Marie-Ange Djite and Antonia Mayer.
Entry date
2014-06-23
Last update
2024-03-04
Cite this re3data.org record:
re3data.org: Ligand-Gated Ion Channel Database; editing status 2024-03-04; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3Q90D last accessed: 2024-04-25- Current projects
- EOSC FAIR-IMPACT
- re3data COREF
-
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re3data.org
has waived all copyright and related or neighboring rights to
the database entries of re3data.org.
-
Except where otherwise noted, content on this site is licensed under a
Creative Commons Attribution 4.0 International License
.
- Cite this service: re3data.org - Registry of Research Data Repositories. https://doi.org/10.17616/R3D last accessed: 2024-04-25
