Repository details

Gramene

Name of repository
Gramene
Repository URL
https://www.gramene.org/
Subject(s)
Description
Gramene is a platform for comparative genomic analysis of agriculturally important grasses, including maize, rice, sorghum, wheat and barley. Relationships between cereals are queried and displayed using controlled vocabularies (Gene, Plant, Trait, Environment, and Gramene Taxonomy) and web-based displays, including the Genes and Quantitative Trait Loci (QTL) modules.
Contact
Content type(s)
Keyword(s)
Persistent identifier(s) of the repository
  • RRID:nif-0000-02926
  • RRID:SCR_002829
  • fairsharing_doi:10.25504/fairsharing.zjdfxz
Repository size
156.836 gene family trees built from 3.867.457 protein coding genes spanning 110 of the plant genomes
Repository type(s)
  • disciplinary
Mission statement for designated community
https://www.gramene.org/about-gramene
Research data repository language(s)
  • English
Data and/or service provider
  • data provider
  • service provider
Institution name
Cold Spring Harbor Laboratory
Identifier(s)
  • RRID:SCR_008326
  • RRID:nif-0000-24690
  • ROR:02qz8b764
Country
United States
Type(s) of responsibility
  • general
Type of institution
non-profit
Institution name
EMBL-EBI
Additional name(s)
  • European Bioinformatics Institute
Identifier(s)
  • RRID:SCR_004727
  • RRID:nlx_72386
  • ROR:2catss52
Country
United Kingdom
Type(s) of responsibility
  • general
Type of institution
non-profit
Institution name
Ensembl
Additional name(s)
  • e!ensembl
Identifier(s)
  • RRID:SCR_002344
  • RRID:nif-0000-21145
Country
United Kingdom
Type(s) of responsibility
  • technical
Type of institution
non-profit
Institution name
Gramene collaborators
Country
United States
Type(s) of responsibility
  • general
Type of institution
non-profit
Institution name
National Science Foundation
Additional name(s)
  • NSF
Identifier(s)
  • RRID:SCR_012938
  • RRID:nlx_inv_1005118
  • ROR:021nxhr62
Contact(s)
Country
United States
Type(s) of responsibility
  • funding
Type of institution
non-profit
Institution name
Oregon State University, Center for Quantitative Life Sciences
Additional name(s)
  • formerly: Center for Genome Research and Biocomputing
  • formerly: CGRB
Identifier(s)
  • RRID:SCR_018373
Contact(s)
Country
United States
Type(s) of responsibility
  • general
Type of institution
non-profit
Institution name
United States Department of Agriculture, Agricultural Research Service
Additional name(s)
  • USDA ARS
Identifier(s)
  • ROR:02d2m2044
  • RRID:SCR_011752
Country
United States
Type(s) of responsibility
  • funding
Type of institution
non-profit

Policies (1)

Policy Name
Gramene Genomes inclusion criteria

Database access

Type of access to research data repository
open

Data access (1)

Type of access to data
open

Data licenses (2)

DataLicense
Public Domain
DataLicense
Copyrights

Data upload (1)

Type of data upload
restricted
Data upload restriction type(s)
  • registration
Persistent identifier system(s)
  • none
Name of the repository software
  • MySQL
Versioning
yes
Data citation guideline
https://www.gramene.org/cite
Enhanced Publication
yes
Quality management
unknown

Application programming interfaces (2)

API type
REST
API type
FTP

Remarks

Entry date
2014-07-17
Last update
2024-02-16
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Cite this re3data.org record:

re3data.org: Gramene; editing status 2024-02-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3GG7M last accessed: 2024-04-20