Repository details

Genomic Observatories MetaDatabase

Name of repository
Genomic Observatories MetaDatabase
Additional name(s)
  • GEOME
Repository URL
https://geome-db.org
Subject(s)
Description
The Genomic Observatories Meta-Database (GEOME) is a web-based database that captures the who, what, where, and when of biological samples and associated genetic sequences. GEOME helps users with the following goals: ensure the metadata from your biological samples is findable, accessible, interoperable, and reusable; improve the quality of your data and comply with global data standards; and integrate with R, ease publication to NCBI's sequence read archive, and work with an associated LIMS. The initial use case for GEOME came from the Diversity of the Indo-Pacific Network (DIPnet) resource.
Contact
Content type(s)
Keyword(s)
Repository type(s)
  • disciplinary
Mission statement for designated community
https://geome-db.org/about
Research data repository language(s)
  • English
Data and/or service provider
  • service provider
  • data provider
Institution name
Diversity of the Indo-Pacific Network
Additional name(s)
  • DIPnet
Contact(s)
Country
International
Type(s) of responsibility
  • general
Type of institution
non-profit
Institution name
National Museum of Natural History
Identifier(s)
  • ROR:00cz47042
Contact(s)
  • meyerC@si.edu
Country
International
Type(s) of responsibility
  • general
Type of institution
non-profit
Institution name
National Science Foundation, Division of Environmental Biology
Additional name(s)
  • DEB
Identifier(s)
  • ROR:03g87he71
Contact(s)
  • debquestions@nsf.gov
Country
United States
Type(s) of responsibility
  • funding
Type of institution
non-profit
Institution name
University of Hawaii
Identifier(s)
  • ROR:03tzaeb71
Contact(s)
  • eric.d.crandall@gmail.com
Country
United States
Type(s) of responsibility
  • funding
Type of institution
non-profit
Start date of responsibility
2017

Policies (1)

Policy Name
Data usage policy

Database access

Type of access to research data repository
open

Database licenses (1)

Database License
Public Domain

Data access (1)

Type of access to data
open

Data licenses (2)

DataLicense
CC
DataLicense
CC0

Data upload (1)

Type of data upload
restricted
Data upload restriction type(s)
  • institutional membership
  • registration

Data upload license (1)

Data upload license name
Data Usage Policy
Persistent identifier system(s)
  • ARK
Name of the repository software
  • other
Data citation guideline
https://geome-db.org/about#dataPolicy
Enhanced Publication
yes
Quality management
yes

Application programming interfaces (1)

API type
REST

Metadata standards (2)

Metadata standard name
Dublin Core
Metadata standard scheme
DCC
Metadata standard name
Darwin Core
Metadata standard scheme
DCC

Remarks

Entry date
2015-11-09
Last update
2021-02-25
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Cite this re3data.org record:

re3data.org: Genomic Observatories MetaDatabase; editing status 2021-02-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3SH1G last accessed: 2024-04-19