Repository details

Pathogen Portal

Name of repository
Pathogen Portal
Additional name(s)
  • the Bioinformatics Resource Centers Portal
Repository URL
https://github.com/cidvbi/PathogenPortal/wiki
Subject(s)
Description
Pathogen Portal is a repository linking to the Bioinformatics Resource Centers (BRCs) sponsored by the National Institute of Allergy and Infectious Diseases (NIAID) and maintained by The Virginia Bioinformatics Institute. The BRCs are providing web-based resources to scientific community conducting basic and applied research on organisms considered potential agents of biowarfare or bioterrorism or causing emerging or re-emerging diseases. The Pathogen Portal supports and links to five Bioinformatics Resource Centers (BRCs). Each BRC specializes in a different group of pathogens, focusing on, but not limited to, pathogens causing (Re-)Emerging Infectious Diseases, and those in the NIAID Category A-C Priority Pathogen lists for biodefense research. The scope of the BRCs also includes Invertebrate Vectors of Human Disease. Pathogen Portal covers EuPathDB, IRD, PATRIC, VectorBase and ViPR.
Contact
  • pathporthelp@vbi.vt.edu
Content type(s)
Keyword(s)
Persistent identifier(s) of the repository
  • RRID:SCR_014603
Repository type(s)
  • disciplinary
Research data repository language(s)
  • English
Data and/or service provider
  • service provider
Institution name
Genome Sequencing Centers for Infectious Diseases
Additional name(s)
  • GSCID
Country
United States
Type(s) of responsibility
  • general
Type of institution
non-profit
Institution name
National Institutes of Health, National Institute of Allergy and Infectious Diseases
Additional name(s)
  • NIH
  • NIAID
Identifier(s)
  • ROR:043z4tv69
Contact(s)
Country
United States
Type(s) of responsibility
  • funding
Type of institution
non-profit
Institution name
National Institutes of Health, National Institute of Allergy and Infectious Diseases. Bioinformatics Resource Centers
Additional name(s)
  • BRCs
Contact(s)
  • alison.yao@nih.gov
Country
United States
Type(s) of responsibility
  • general
Type of institution
non-profit
Institution name
Virginia Tech, Virginia Biocomplexity Institute
Country
United States
Type(s) of responsibility
  • technical
  • funding
Type of institution
non-profit

Policies (2)

Policy Name
NIAID Data Management and Sharing Guidelines
Policy Name
NIAID/Division of Microbiology and Infectious Diseases (DMID) Resources and Data Sharing

Database access

Type of access to research data repository
open

Database licenses (1)

Database License
other

Data access (1)

Type of access to data
open

Data licenses (1)

DataLicense
other

Data upload (1)

Type of data upload
restricted
Data upload restriction type(s)
  • other
Persistent identifier system(s)
  • none
Name of the repository software
  • unknown
Versioning
yes
Enhanced Publication
unknown
Quality management
unknown

Remarks

Remarks
Software see also: https://sourceforge.net/projects/pathogenportal/
Entry date
2016-02-10
Last update
2022-05-12
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Cite this re3data.org record:

re3data.org: Pathogen Portal; editing status 2022-05-12; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3VW6S last accessed: 2024-04-24