Repository details
The Cancer Immunome Atlas
Name of repository
The Cancer Immunome Atlas
Additional name(s)
- TCIA
- The Cancer Immunome Database
- The Cancer Immunome Database
Repository URL
Subject(s)
Description
The Cancer Immunome Database (TCIA) provides results of comprehensive immunogenomic analyses of next generation sequencing data (NGS) data for 20 solid cancers from The Cancer Genome Atlas (TCGA) and other datasource. The Cancer Immunome Atlas (TCIA) was developed and is maintained at the Division of Bioinformatics (ICBI). The database can be queried for the gene expression of specific immune-related gene sets, cellular composition of immune infiltrates (characterized using gene set enrichment analyses and deconvolution), neoantigens and cancer-germline antigens, HLA types, and tumor heterogeneity (estimated from cancer cell fractions). Moreover it provides survival analyses for different types immunological parameters.
TCIA will be constantly updated with new data and results.
Contact
- https://tcia.at/contact
- dietmar.rieder@i-med.ac.at
- zlatko.trajanoski@i-med.ac.at
- icbi@i-med.ac.at
Keyword(s)
Persistent identifier(s) of the repository
- RRID:SCR_014508
Repository size
24 projects; 20 diseases; 9.562 cases
Repository type(s)
- disciplinary
Mission statement for designated community
Research data repository language(s)
- English
Data and/or service provider
- data provider
Institution name
Additional name(s)
- Advanced Bioinformatics Platform for Personalised Cancer Immunotherapy
Country
Type(s) of responsibility
- funding
Type of institution
non-profit
End date of responsibility
2018
Institution name
Country
Type(s) of responsibility
- funding
Type of institution
non-profit
Additional name(s)
- ICBI
- Medizinische Universität Innsbruck, Sektion für Bioinformatik
Contact(s)
- zlatko.trajanoski@i-med.ac.at
- icbi@i-med.ac.at
Country
Type(s) of responsibility
- general
- technical
Type of institution
non-profit
Start date of responsibility
2016-06-01
Policies (2)
Policy Name
Policy Name
Database access
Type of access to research data repository
open
Data access (4)
Type of access to data
open
Type of access to data
restricted
Type of access to data
embargoed
Type of access to data
closed
Data licenses (2)
DataLicense
DataLicense
Data upload (1)
Type of data upload
closed
Persistent identifier system(s)
- none
Name of the repository software
- unknown
Data citation guideline
Enhanced Publication
unknown
Quality management
unknown
Remarks
Remarks
Datasources: TCGA
Access TCGA Data: Genomic Data Commons Data Portal https://www.re3data.org/repository/r3d100012061
Entry date
2016-06-24
Last update
2022-11-25
Cite this re3data.org record:
re3data.org: The Cancer Immunome Atlas; editing status 2022-11-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R37D2V last accessed: 2024-04-26- Current projects
- EOSC FAIR-IMPACT
- re3data COREF
-
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.
- Cite this service: re3data.org - Registry of Research Data Repositories. https://doi.org/10.17616/R3D last accessed: 2024-04-26
