Remarks
We plan to implement an automatic submission of the experiments in MaxQB to PRIDE, so that MaxQB data are also available in the databases that are part of ProteomeXchange. But Additionally, MaxQB features a number of analysis tools that are not currently present in other databases. For example, we here introduced a procedure to adjust the required cutoff scores to keep the overall false positive rate constant when incremental proteome projects are added. These analysis tools can be used in MaxQB, but they could also be incorporated into other proteome databases.