Repository details
Hardwood Genomics Project
Name of repository
Hardwood Genomics Project
Additional name(s)
- HWG
- Genomic resources for hardwood trees
Repository URL
Subject(s)
Description
This database serves forest tree scientists by providing online access to hardwood tree genomic and genetic data, including assembled reference genomes, transcriptomes, and genetic mapping information. The web site also provides access to tools for mining and visualization of these data sets, including BLAST for comparing sequences, Jbrowse for browsing genomes, Apollo for community annotation and Expression Analysis to build gene expression heatmaps.
Content type(s)
Keyword(s)
Persistent identifier(s) of the repository
- FAIRsharing_doi:10.25504/FAIRsharing.srgkaf
Repository type(s)
- disciplinary
Mission statement for designated community
Research data repository language(s)
- English
Data and/or service provider
- data provider
- service provider
Institution name
Additional name(s)
- NSF
Identifier(s)
- ROR:021nxhr62
Contact(s)
Country
Type(s) of responsibility
- funding
Type of institution
non-profit
Institution name
Additional name(s)
- UTIA
- EPP
Country
Type(s) of responsibility
- general
- technical
Type of institution
non-profit
Policies (3)
Database access
Type of access to research data repository
open
Database licenses (1)
Database License
Data access (1)
Type of access to data
open
Data licenses (3)
Data upload (1)
Type of data upload
restricted
Data upload restriction type(s)
- other
Persistent identifier system(s)
- none
Name of the repository software
- other
Enhanced Publication
yes
Quality management
unknown
Remarks
Remarks
All original sequence data is being deposited in NCBI's Sequence Read Archive https://www.ncbi.nlm.nih.gov/sra and the genetic linkage maps and associated marker data will be available at the Dendrome database --- This website was originally developed to house data from the Comparative Genomics of Environmental Stress Responses in North American Hardwoods.
Entry date
2017-04-18
Last update
2023-03-22
Cite this re3data.org record:
re3data.org: Hardwood Genomics Project; editing status 2023-03-22; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TD3H last accessed: 2024-04-24- Current projects
- EOSC FAIR-IMPACT
- re3data COREF
-
To the extent possible under law,
re3data.org
has waived all copyright and related or neighboring rights to
the database entries of re3data.org.
-
Except where otherwise noted, content on this site is licensed under a
Creative Commons Attribution 4.0 International License
.
- Cite this service: re3data.org - Registry of Research Data Repositories. https://doi.org/10.17616/R3D last accessed: 2024-04-24
