Repository details

AmoebaDB

Name of repository
AmoebaDB
Repository URL
https://amoebadb.org/amoeba/app
Subject(s)
Description
AmoebaDB belongs to the EuPathDB family of databases and is an integrated genomic and functional genomic database for Entamoeba and Acanthamoeba parasites. In its first iteration (released in early 2010), AmoebaDB contains the genomes of three Entamoeba species (see below). AmoebaDB integrates whole genome sequence and annotation and will rapidly expand to include experimental data and environmental isolate sequences provided by community researchers . The database includes supplemental bioinformatics analyses and a web interface for data-mining.
Contact
Content type(s)
Keyword(s)
Persistent identifier(s) of the repository
  • MIR:00000148
  • FAIRsharing_doi:10.25504/FAIRsharing.swbypy
Repository type(s)
  • disciplinary
Mission statement for designated community
https://amoebadb.org/amoeba/app/static-content/about.html
Research data repository language(s)
  • English
Data and/or service provider
  • data provider
Institution name
National Institutes of Health, National Institute of Allergy and Infectious Diseases, Bioinformatics Resource Centers
Additional name(s)
  • NIH
  • NIAID
  • BRC
Country
United States
Type(s) of responsibility
  • general
  • funding
Type of institution
non-profit
Institution name
University of Georgia
Identifier(s)
  • ROR:02bjhwk41
  • RRID:SCR_004954
Country
United States
Type(s) of responsibility
  • technical
Type of institution
non-profit
Institution name
University of Pennsylvania
Identifier(s)
  • ROR:00b30xv10
  • RRID:SCR_004275
Country
United States
Type(s) of responsibility
  • technical
Type of institution
non-profit

Policies (2)

Policy Name
NIH Genomic Data Sharing
Policy Name
NIAID Data Sharing and Release Guidelines

Database access

Type of access to research data repository
open

Data access (2)

Type of access to data
open
Type of access to data
embargoed

Data licenses (1)

DataLicense
Public Domain

Data upload (1)

Type of data upload
restricted
Data upload restriction type(s)
  • other

Data upload license (1)

Data upload license name
Data Submission and Release on EuPathDB Databases
Persistent identifier system(s)
  • none
Name of the repository software
  • CKAN
Versioning
yes
Data citation guideline
https://amoebadb.org/amoeba/app/static-content/about.html#about_citing
Enhanced Publication
unknown
Quality management
unknown

Application programming interfaces (2)

API type
REST
API type
REST

Metadata standards (1)

Metadata standard name
Repository-Developed Metadata Schemas
Metadata standard scheme
DCC

Remarks

Entry date
2017-09-05
Last update
2023-10-04
Back to search
Submit a change request
Get a badge
The DataCite logo

Cite this re3data.org record:

re3data.org: AmoebaDB; editing status 2023-10-04; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3PX9Q last accessed: 2024-04-23