Repository details

Vega

Name of repository
Vega
Additional name(s)
  • Vertebrate Genome Annotation database
Repository URL
http://vega.archive.ensembl.org/index.html
Subject(s)
Description
A repository for high-quality gene models produced by the manual annotation of vertebrate genomes. The final update of Vega, version 68, was released in February 2017 and is now archived at vega.archive.ensembl.org. We plan to maintain this resource until Feb 2020.
Contact
Content type(s)
Keyword(s)
Persistent identifier(s) of the repository
  • RRID:SCR_007907
  • RRID:nif-0000-03626
  • FAIRsharing_doi:10.25504/FAIRsharing.mr293q
Repository type(s)
  • disciplinary
Mission statement for designated community
http://vega.archive.ensembl.org/info/about/data_access.html
Research data repository language(s)
  • English
Data and/or service provider
  • data provider
Institution name
National Instiutes of Health
Additional name(s)
  • NIH
Identifier(s)
  • ROR:01cwqze88
Contact(s)
Country
United States
Type(s) of responsibility
  • funding
Type of institution
non-profit
Institution name
UK Search and Innovation, Biotechnology and Biological Sciences Research Council
Additional name(s)
  • UKRI, BBSRC
Identifier(s)
  • ROR:00cwqg982
Contact(s)
  • webmaster@bbsrc.ac.uk
Country
United Kingdom
Type(s) of responsibility
  • funding
Type of institution
non-profit
Institution name
Wellcome Trust Sanger Institute
Identifier(s)
  • ROR:05cy4wa09
Contact(s)
Country
United Kingdom
Type(s) of responsibility
  • general
  • funding
Type of institution
non-profit

Policies (1)

Policy Name
Data sharing policy

Database access

Type of access to research data repository
open

Data access (1)

Type of access to data
open

Data licenses (1)

DataLicense
Copyrights

Data upload (1)

Type of data upload
closed
Name of the repository software
  • MySQL
Data citation guideline
http://vega.archive.ensembl.org/Help/Faq?id=392
Enhanced Publication
unknown
Quality management
unknown

Application programming interfaces (1)

API type
REST

Remarks

Remarks
Tools using VEGA: Otter (http://www.sanger.ac.uk/science/tools/otter/) enables human annotators to compare numerous sources of evidence and then to build gene objects with multiple alternative transcripts. The SeqTools package (http://www.sanger.ac.uk/science/tools/seqtools/) contains three tools for visualising sequence alignments: Blixem, Dotter and Belvu.
Entry date
2017-12-14
Last update
2023-03-17
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Cite this re3data.org record:

re3data.org: Vega; editing status 2023-03-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3W77X last accessed: 2024-04-25