Repository details
Small Molecule Pathway Database
Name of repository
Small Molecule Pathway Database
Additional name(s)
- formerly: PathBank
- SMPDB
Repository URL
Subject(s)
Description
The Small Molecule Pathway Database (SMPDB) contains small molecule pathways found in humans, which are presented visually. All SMPDB pathways include information on the relevant organs, subcellular compartments, protein cofactors, protein locations, metabolite locations, chemical structures and protein quaternary structures. Accompanying data includes detailed descriptions and references, providing an overview of the pathway, condition or processes depicted in each diagram.
Contact
- https://smpdb.ca/contact
- david.wishart@ualberta.ca
Content type(s)
Keyword(s)
Persistent identifier(s) of the repository
- RRID:SCR_004844
- RRID:nlx_143926
- MIR:00000104
- FAIRsharing_doi:10.25504/fairsharing.y1zyaq
Repository size
Pathways 49.833
Repository type(s)
- disciplinary
Mission statement for designated community
Research data repository language(s)
- English
Data and/or service provider
- data provider
Institution name
Identifier(s)
- ROR:00ynafe15
Country
Type(s) of responsibility
- funding
Type of institution
non-profit
Institution name
Additional name(s)
- Instituts de recherche en santé du Canada
- CIHR
- IRSC
Identifier(s)
- RRID:nlx_45689
- RRID:SCR_012838
- ROR:01gavpb45
Country
Type(s) of responsibility
- funding
Type of institution
non-profit
Start date of responsibility
2010
Institution name
Additional name(s)
- TMIC
Identifier(s)
- ROR:03r5x2b75
Country
Type(s) of responsibility
- general
Type of institution
non-profit
Start date of responsibility
2010
Institution name
Identifier(s)
- RRID:SCR_001853
- RRID:nlx_10148
- ROR:0160cpw27
Country
Type(s) of responsibility
- general
Type of institution
non-profit
Institution name
Contact(s)
- http://www.wishartlab.com/contact
- david.wishart@ualberta.ca
Country
Type(s) of responsibility
- general
- technical
Type of institution
non-profit
Policies (1)
Policy Name
Database access
Type of access to research data repository
open
Data access (1)
Type of access to data
open
Data licenses (1)
DataLicense
Data upload (1)
Type of data upload
closed
Persistent identifier system(s)
- none
Name of the repository software
- unknown
Versioning
yes
Data citation guideline
Enhanced Publication
unknown
Quality management
unknown
Remarks
Remarks
Each small molecule is hyperlinked to detailed descriptions contained in the Human Metabolome Database - HMDB or DrugBank and each protein_complex or enzyme complex is hyperlinked to UniProt.
A pathway drawing tool called PathWhiz (https://smpdb.ca/pathwhiz) is available for public use.
SMP-MAP can be used for multiple entity highlighting and mapping.
Entry date
2018-07-05
Last update
2023-03-03
Cite this re3data.org record:
re3data.org: Small Molecule Pathway Database; editing status 2023-03-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TB93 last accessed: 2024-04-26- Current projects
- EOSC FAIR-IMPACT
- re3data COREF
-
To the extent possible under law,
re3data.org
has waived all copyright and related or neighboring rights to
the database entries of re3data.org.
-
Except where otherwise noted, content on this site is licensed under a
Creative Commons Attribution 4.0 International License
.
- Cite this service: re3data.org - Registry of Research Data Repositories. https://doi.org/10.17616/R3D last accessed: 2024-04-26
