Repository details

China National GeneBank DataBase

Name of repository
China National GeneBank DataBase
Additional name(s)
  • 国家基因库生命大数据平台
  • CNGBdb
Repository URL
https://db.cngb.org/
Subject(s)
Description
The China National GeneBank database (CNGBdb) is a unified platform for biological big data sharing and application services. CNGBdb has now integrated a large amount of internal and external biological data from resources such as CNGB, NCBI, and the EBI. There are several sub-databases in CNGBdb, including literature, variation, gene, genome, protein, sequence, organism, project, sample, experiment, run, and assembly. Based on underlying big data and cloud computing technologies, it provides various data services, including archive, analysis, knowledge search, and management authorization of biological data. CNGBdb adopts data structures and standards of international omics, health, and medicine, such as The International Nucleotide Sequence Database Collaboration (INSDC), The Global Alliance for Genomics and Health GA4GH (GA4GH), Global Genome Biodiversity Network (GGBN), American College of Medical Genetics and Genomics (ACMG), and constructs standardized data and structures with wide compatibility. All public data and services provided by CNGBdb are freely available to all users worldwide. CNGB Sequence Archive (CNSA) is the bionomics data repository of CNGBdb. CNGB Sequence Archive (CNSA) is a convenient and efficient archiving system of multi-omics data in life science, which provides archiving services for raw sequencing reads and further analyzed results. CNSA follows the international data standards for omics data, and supports online and batch submission of multiple data types such as Project, Sample, Experiment/Run, Assembly, Variation, Metabolism, Single cell, and Sequence. Moreover, CNSA has achieved the correlation of sample entities, sample information, and analyzed data on some projects. Its data submission service can be used as a supplement to the literature publishing process to support early data sharing.CNGB Sequence Archive (CNSA) is a convenient and efficient archiving system of multi-omics data in the life science of CNGBdb, which provides archiving services for raw sequencing reads and further analyzed results. CNSA follows the international data standards for omics data, and supports online and batch submission of multiple data types such as Project, Sample, Experiment/Run, Assembly, Variation, Metabolism, Single cell, Sequence. Its data submission service can be used as a supplement to the literature publishing process to support early data sharing.
Contact
  • CNGBdb@cngb.org
Content type(s)
Keyword(s)
Persistent identifier(s) of the repository
  • FAIRsharing_doi: 10.25504/FAIRsharing.9btRvC
Repository size
4.901 projects; 735.895 samples submitted by 418 institutions; 9.363 TB
Repository type(s)
  • disciplinary
Mission statement for designated community
https://db.cngb.org/about/
Research data repository language(s)
  • Chinese
  • English
Data and/or service provider
  • service provider
  • data provider
Institution name
China National GeneBank
Additional name(s)
  • 国家基因库
  • CNGB
Identifier(s)
  • ROR:03n9hr695
Contact(s)
  • CNGBdb@cngb.org
Country
China
Type(s) of responsibility
  • technical
  • general
Type of institution
non-profit
Start date of responsibility
2011-10

Policies (2)

Policy Name
Protection for data sharing, data security policy
Policy Name
Terms and conditions

Database access

Type of access to research data repository
open

Data access (1)

Type of access to data
open

Data licenses (2)

DataLicense
CC
DataLicense
Copyrights

Data upload (1)

Type of data upload
restricted
Data upload restriction type(s)
  • registration
  • other

Data upload license (1)

Data upload license name
CNGBdb (CNGB Sequence Archive) data access
Persistent identifier system(s)
  • DOI
Name of the repository software
  • unknown
Enhanced Publication
unknown
Quality management
yes

Application programming interfaces (2)

API type
FTP
API type
FTP

Metadata standards (2)

Metadata standard name
ISA-Tab
Metadata standard scheme
DCC
Metadata standard name
DataCite Metadata Schema
Metadata standard scheme
DCC

Remarks

Remarks
is covered by Elsevier. Data standard: CNGBdb integrates data structures and standards of international omics, health, and medicine, such as The International Nucleotide Sequence Database Collaboration (INSDC), The Global Alliance for Genomics and Health GA4GH (GA4GH), Global Genome Biodiversity Network (GGBN), American College of Medical Genetics and Genomics (ACMG), and constructs standardized data standards and structures with wide compatibility.
Entry date
2018-12-13
Last update
2023-01-04
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Cite this re3data.org record:

re3data.org: China National GeneBank DataBase; editing status 2023-01-04; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJMGL last accessed: 2024-04-26