Repository details
BAliBASE
Name of repository
BAliBASE
Additional name(s)
- Benchmark Alignment dataBASE
Repository URL
Subject(s)
Description
A collection of high quality multiple sequence alignments for objective, comparative studies of alignment algorithms. The alignments are constructed based on 3D structure superposition and manually refined to ensure alignment of important functional residues. A number of subsets are defined covering many of the most important problems encountered when aligning real sets of proteins. It is specifically designed to serve as an evaluation resource to address all the problems encountered when aligning complete sequences. The first release provided sets of reference alignments dealing with the problems of high variability, unequal repartition and large N/C-terminal extensions and internal insertions. Version 2.0 of the database incorporates three new reference sets of alignments containing structural repeats, trans-membrane sequences and circular permutations to evaluate the accuracy of detection/prediction and alignment of these complex sequences.
Within the resource, users can look at a list of all the alignments, download the whole database by ftp, get the "c" program to compare a test alignment with the BAliBASE reference (The source code for the program is freely available), or look at the results of a comparison study of several multiple alignment programs, using BAliBASE reference sets.
Contact
- thompson@unistra.fr
Content type(s)
Keyword(s)
Persistent identifier(s) of the repository
- RRID:SCR_001940
- OMICS_00971
- RRID:nif-0000-02594
- FAIRsharing_doi:10.25504/FAIRsharing.sed5tq
Repository type(s)
- disciplinary
Research data repository language(s)
- English
Data and/or service provider
- data provider
Institution name
Identifier(s)
- RRID:SCR_011704
- ROR:00pg6eq24
Country
Type(s) of responsibility
- general
Type of institution
non-profit
Database access
Type of access to research data repository
open
Data access (1)
Type of access to data
open
Data licenses (1)
DataLicense
Data upload (1)
Type of data upload
restricted
Data upload restriction type(s)
- institutional membership
Name of the repository software
- other
Versioning
yes
Enhanced Publication
unknown
Quality management
unknown
Remarks
Entry date
2019-02-11
Last update
2021-10-25
Cite this re3data.org record:
re3data.org: BAliBASE; editing status 2021-10-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJMHE last accessed: 2024-04-26- Current projects
- EOSC FAIR-IMPACT
- re3data COREF
-
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has waived all copyright and related or neighboring rights to
the database entries of re3data.org.
-
Except where otherwise noted, content on this site is licensed under a
Creative Commons Attribution 4.0 International License
.
- Cite this service: re3data.org - Registry of Research Data Repositories. https://doi.org/10.17616/R3D last accessed: 2024-04-26
