The ENCODE Encyclopedia organizes the most salient analysis products into annotations, and provides tools to search and visualize them. The Encyclopedia has two levels of annotations:
Integrative-level annotations integrate multiple types of experimental data and ground level annotations.
Ground-level annotations are derived directly from the experimental data, typically produced by uniform processing pipelines.
see also: https://www.genome.gov/Funded-Programs-Projects/ENCODE-Project-ENCyclopedia-Of-DNA-ElementsThe data generated by projects and participants in the pilot phase were submitted, processed, and released by the UCSC Genome Browser. The data from the pilot phase are still accessible from the pilot phase repository at UCSC http://genome.ucsc.edu/ENCODE/pilot.html
See also: https://www.genome.gov/Funded-Programs-Projects/ENCODE-Project-ENCyclopedia-Of-DNA-Elements