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Found 12 result(s)

Bioconductor

Open Source Software for Bioinformatics

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Bioconductor provides tools for the analysis and comprehension of high-throughput genomic data. Bioconductor uses the R statistical programming language, and is open source and open development. It has two releases each year, and an active user community. Bioconductor is also available as an AMI (Amazon Machine Image) and a series of Docker images.

NCBI Influenza Virus Resource

NCBI Flu

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This resource allows users to search for and compare influenza virus genomes and gene sequences taken from GenBank. It also provides a virus sequence annotation tool and links to other influenza resources: NIAID project, JCVI Flu, Influenza research database, CDC Flu, Vaccine Selection and WHO Flu. NOTE: The redirects that are planned for completion by May 2024 will NOT impact the Influenza Virus Resource in any way. The Influenza Virus Resource will continue to be available, serving up data to support our Flu-research community.

NCBI Genome

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<<<!!!<<< Effective May 2024, NCBI's Genome resource will no longer be available. NCBI Genome data can now be found on the NCBI Datasets taxonomy pages. https://www.re3data.org/repository/r3d100014298 >>>!!!>>> The Genome database contains annotations and analysis of eukaryotic and prokaryotic genomes, as well as tools that allow users to compare genomes and gene sequences from humans, microbes, plants, viruses and organelles. Users can browse by organism, and view genome maps and protein clusters.

NCBI dbGaP

DataBase of Genotypes And Phenotypes

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The NCBI database of Genotypes and Phenotypes archives and distributes the results of studies that have investigated the interaction of genotype and phenotype, including genome-wide association studies, medical sequencing, molecular diagnostic assays, and association between genotype and non-clinical traits. The database provides summaries of studies, the contents of measured variables, and original study document text. dbGaP provides two types of access for users, open and controlled. Through the controlled access, users may access individual-level data such as phenotypic data tables and genotypes.

GFZ Data Services

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GFZ Data Services is a repository for research data and scientific software across the Earth System Sciences, hosted at GFZ. The curated data are archived, persistently accessible and published with digital object identifier (DOI). They range from large dynamic datasets from global monitoring networks with real-time aquisition, to international services in geodesy and geophysics, to the full suite of small and highly heterogeneous datasets collected by individual researchers or small teams ("long-tail data"). In addition to the DOI registration and data archiving itself, GFZ Data Services team offers comprehensive consultation by domain scientists and IT specialists. Among others, GFZ Data Services is data publisher for the IAG Services ICGEM, IGETS and ISG (IAG = Int. Association for Geodesy; ICGEM = Int. Center for Global Earth Models; IGETS = Int. Geodynamics and Earth Tide Service; ISG = Int. Service for the Geoid), the World Stress Map, INTERMAGNET, GEOFON, the Geophysical Instrument Pool Potsdam GIPP, TERENO, EnMAP Flight Campaigns, the Potsdam Institute for Climate Impact Research PIK, the Specialised Information Service for Solid Earth Geosciences (FID GEO) and hosts the GFZ Catalogue for the International Generic Sample Number IGSN.

CLARIN INT Portal

CLARIN INT Center

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The focus of CLARIN INT Portal is on resources that are relevant to the lexicological study of the Dutch language and on resources relevant for research in and development of language and speech technology. For Example: lexicons, lexical databases, text corpora, speech corpora, language and speech technology tools, etc. The resources are: Cornetto-LMF (Lexicon Markup Framework), Corpus of Contemporary Dutch (Corpus Hedendaags Nederlands), Corpus Gysseling, Corpus VU-DNC (VU University Diachronic News text Corpus), Dictionary of the Frisian Language (Woordenboek der Friese Taal), DuELME-LMF (Lexicon Markup Framework), Language Portal (Taalportaal), Namescape, NERD (Named Entity Recognition and Disambiguation) and TICCLops (Text-Induced Corpus Clean-up online processing system).

National Addiction & HIV Data Archive Program

NAHDAP

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NAHDAP acquires, preserves and disseminates data relevant to drug addiction and HIV research. By preserving and making available an easily accessible library of electronic data on drug addiction and HIV infection in the United States, NAHDAP offers scholars the opportunity to conduct secondary analysis on major issues of social and behavioral sciences and public policy

Plant and Fungal Carbohydrate Structure Database

PFCSDB

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<<<!!!<<< Bacterial (BCSDB) and Plant&Fungal (PFCSDB) carbohydrate structure databases have been merged into a single database, CSDB >>>!!!>>>

Open Exoplanet Catalogue

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The Open Exoplanet Catalogue is a catalogue of all discovered extra-solar planets. It is a new kind of astronomical database. It is decentralized and completely open. We welcome contributions and corrections from both professional astronomers and the general public.

Network Repository

Network Data Repository, Graph Data, Social Networks

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Network Repository is the first interactive data repository for graph and network data. It hosts graph and network datasets, containing hundreds of real-world networks and benchmark datasets. Unlike other data repositories, Network Repository provides interactive analysis and visualization capabilities to allow researchers to explore, compare, and investigate graph data in real-time on the web.

Influenza Research Database

IRD

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<<<!!!<<< The migration of the data, tools, and services from the legacy IRD and ViPR applications to BV-BRC is now complete. All web traffic from the IRD and ViPR resources is also being forwarded to the BV-BRC home page https://www.re3data.org/repository/r3d100014100 >>>!!!>>>

Astrophysics Source Code Library

ASCL

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The Astrophysics Source Code Library (ASCL) is a free online registry for source codes of interest to astronomers and astrophysicists and lists codes that have been used in research that has appeared in, or been submitted to, peer-reviewed publications. The ASCL is citable by using the unique ascl ID assigned to each code. The ascl ID can be used to link to the code entry by prefacing the number with ascl.net (i.e., ascl.net/1201.001).