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Found 17 result(s)

IMEx

The International Molecular Exchange Consortium

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The IMEx consortium is an international collaboration between a group of major public interaction data providers who have agreed to share curation effort and develop and work to a single set of curation rules when capturing data from both directly deposited interaction data or from publications in peer-reviewed journals, capture full details of an interaction in a “deep” curation model, perform a complete curation of all protein-protein interactions experimentally demonstrated within a publication, make these interaction available in a single search interface on a common website, provide the data in standards compliant download formats, make all IMEx records freely accessible under the Creative Commons Attribution License

IMS Universität Stuttgart Repository

IMS Fedora Repository

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Currently, the IMS repository focuses on resources provided by the Institute for Natural Language Processing in Stuttgart (IMS) and other CLARIN-D related institutions such as the local Collaborative Research Centre 732 (SFB 732) as well as institutions and/or organizations that belong to the CLARIN-D extended scientific community. Comprehensive guidelines and workflows for submission by external contributors are being compiled based on the experiences in archiving such in-house resources.

Repository CLARIN Centre Leipzig

CLARIN repository at the Saxon Academy of Sciences and Humanities

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The CLARIN­/Text+ repository at the Saxon Academy of Sciences and Humanities in Leipzig offers long­term preservation of digital resources, along with their descriptive metadata. The mission of the repository is to ensure the availability and long­term preservation of resources, to preserve knowledge gained in research, to aid the transfer of knowledge into new contexts, and to integrate new methods and resources into university curricula. Among the resources currently available in the Leipzig repository are a set of corpora of the Leipzig Corpora Collection (LCC), based on newspaper, Wikipedia and Web text. Furthermore several REST-based webservices are provided for a variety of different NLP-relevant tasks The repository is part of the CLARIN infrastructure and part of the NFDI consortium Text+. It is operated by the Saxon Academy of Sciences and Humanities in Leipzig.

Open Forest Data

e-Puszcza

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Podlasie digital repository of natural science data

Copernicus Contributing Missions Online

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As part of the Copernicus Space Component programme, ESA manages the coordinated access to the data procured from the various Contributing Missions and the Sentinels, in response to the Copernicus users requirements. The Data Access Portfolio documents the data offer and the access rights per user category. The CSCDA portal is the access point to all data, including Sentinel missions, for Copernicus Core Users as defined in the EU Copernicus Programme Regulation (e.g. Copernicus Services).The Copernicus Space Component (CSC) Data Access system is the interface for accessing the Earth Observation products from the Copernicus Space Component. The system overall space capacity relies on several EO missions contributing to Copernicus, and it is continuously evolving, with new missions becoming available along time and others ending and/or being replaced.

ProteomeXchange

PX

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The ProteomeXchange consortium has been set up to provide a single point of submission of MS proteomics data to the main existing proteomics repositories, and to encourage the data exchange between them for optimal data dissemination. Current members accepting submissions are: The PRIDE PRoteomics IDEntifications database at the European Bioinformatics Institute focusing mainly on shotgun mass spectrometry proteomics data PeptideAtlas/PASSEL focusing on SRM/MRM datasets.

IMGT/HLA Database

IPD-IMGT/HLA

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The IPD-IMGT/HLA Database provides a specialist database for sequences of the human major histocompatibility complex (MHC) and includes the official sequences named by the WHO Nomenclature Committee For Factors of the HLA System. The IPD-IMGT/HLA Database is part of the international ImMunoGeneTics project (IMGT). The database uses the 2010 naming convention for HLA alleles in all tools herein. To aid in the adoption of the new nomenclature, all search tools can be used with both the current and pre-2010 allele designations. The pre-2010 nomenclature designations are only used where older reports or outputs have been made available for download.

Ensembl Protists

e!EnsemblProtists

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EnsemblProtists is a genome-centric portal for protists species.

European Climate Assessment & Dataset project

ECA&D

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Presented is information on changes in weather and climate extremes, as well as the daily dataset needed to monitor and analyse these extremes. map of participating countries. Today, ECA&D is receiving data from 59 participants for 62 countries and the ECA dataset contains 33265 series of observations for 12 elements at 7512 meteorological stations throughout Europe and the Mediterranean (see Daily data > Data dictionary). 51% of these series is public, which means downloadable from this website for non-commercial research. Participation to ECA&D is open to anyone maintaining daily station data

The University of Oxford Text Archive

OTA

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The University of Oxford Text Archive develops, collects, catalogues and preserves electronic literary and linguistic resources for use in Higher Education, in research, teaching and learning. We also give advice on the creation and use of these resources, and are involved in the development of standards and infrastructure for electronic language resources.

Ensembl Fungi

e!EnsemblFungi

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EnsemblFungi is a genome-centric portal for fungal species. It is a project to maintain annotation on selected genomes.

European Zebrafish Resource Center

EZRC

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The EZRC at KIT houses the largest experimental fish facility in Europe with a capacity of more than 300,000 fish. Zebrafish stocks are maintained mostly as frozen sperm. Frequently requested lines are also kept alive as well as a selection of wildtype strains. Several thousand mutations in protein coding genes generated by TILLING in the Stemple lab of the Sanger Centre, Hinxton, UK and lines generated by ENU mutagenesis by the Nüsslein-Volhard lab in addition to transgenic lines and mutants generated by KIT groups or brought in through collaborations. We also accept submissions on an individual basis and ship fish upon request to PIs in Europe and elsewhere. EZRC also provides screening services and technologies such as imaging and high-throughput sequencing. Key areas include automation of embryo handling and automated image acquisition and processing. Our platform also involves the development of novel microscopy techniques (e.g. SPIM, DSLM, robotic macroscope) to permit high-resolution, real-time imaging in 4D. By association with the ComPlat platform, we can support also chemical screens and offer libraries with up to 20,000 compounds in total for external users. As another service to the community the EZRC provides plasmids (cDNAs, transgenes, Talen, Crispr/cas9) maintained by the Helmholtz repository of Bioparts (HERBI) to the scientific community. In addition the fish facility keeps a range of medaka stocks, maintained by the Loosli group.

FAIRDOMHub

The SEEK datafiles

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The FAIRDOMHub is built upon the SEEK software suite, which is an open source web platform for sharing scientific research assets, processes and outcomes. FAIRDOM (Web Site) will establish a support and service network for European Systems Biology. It will serve projects in standardizing, managing and disseminating data and models in a FAIR manner: Findable, Accessible, Interoperable and Reusable. FAIRDOM is an initiative to develop a community, and establish an internationally sustained Data and Model Management service to the European Systems Biology community. FAIRDOM is a joint action of ERA-Net EraSysAPP and European Research Infrastructure ISBE.

TalkBank

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TalkBank provides transcripts, audio and video of communicative interactions for research in human and animal communication.

CLARIN repository at the University of Tübingen

CLARIN Center Tübingen

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The repository is part of the National Research Data Infrastructure initiative Text+, in which the University of Tübingen is a partner. It is housed at the Department of General and Computational Linguistics. The infrastructure is maintained in close cooperation with the Digital Humanities Centre, which is a core facility of the university, colaborating with the library and computing center of the university. Integration of the repository into the national CLARIN-D and international CLARIN infrastructures gives it wide exposure, increasing the likelihood that the resources will be used and further developed beyond the lifetime of the projects in which they were developed. Among the resources currently available in the Tübingen Center Repository, researchers can find widely used treebanks of German (e.g. TüBa-D/Z), the German wordnet (GermaNet), the first manually annotated digital treebank (Index Thomisticus), as well as descriptions of the tools used by the WebLicht ecosystem for natural language processing.

Global Genome Biodiversity Network

DNA Bank Network (formerly)

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The DNA Bank Network was established in spring 2007 and was funded until 2011 by the German Research Foundation (DFG). The network was initiated by GBIF Germany (Global Biodiversity Information Facility). It offers a worldwide unique concept. DNA bank databases of all partners are linked and are accessible via a central web portal, providing DNA samples of complementary collections (microorganisms, protists, plants, algae, fungi and animals). The DNA Bank Network was one of the founders of the Global Genome Biodiversity Network (GGBN) and is fully merged with GGBN today. GGBN agreed on using the data model proposed by the DNA Bank Network. The Botanic Garden and Botanical Museum Berlin-Dahlem (BGBM) hosts the technical secretariat of GGBN and its virtual infrastructure. The main focus of the DNA Bank Network is to enhance taxonomic, systematic, genetic, conservation and evolutionary studies by providing: • high quality, long-term storage of DNA material on which molecular studies have been performed, so that results can be verified, extended, and complemented, • complete on-line documentation of each sample, including the provenance of the original material, the place of voucher deposit, information about DNA quality and extraction methodology, digital images of vouchers and links to published molecular data if available.

Ensembl Genomes

e!EnsemblGenomes

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The Ensembl genome annotation system, developed jointly by the EBI and the Wellcome Trust Sanger Institute, has been used for the annotation, analysis and display of vertebrate genomes since 2000. Since 2009, the Ensembl site has been complemented by the creation of five new sites, for bacteria, protists, fungi, plants and invertebrate metazoa, enabling users to use a single collection of (interactive and programatic) interfaces for accessing and comparing genome-scale data from species of scientific interest from across the taxonomy. In each domain, we aim to bring the integrative power of Ensembl tools for comparative analysis, data mining and visualisation across genomes of scientific interest, working in collaboration with scientific communities to improve and deepen genome annotation and interpretation.