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Found 58 result(s)

INTREPID bioinformatics

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!!! >>> intrepidbio.com expired <<< !!!! Intrepid Bioinformatics serves as a community for genetic researchers and scientific programmers who need to achieve meaningful use of their genetic research data – but can’t spend tremendous amounts of time or money in the process. The Intrepid Bioinformatics system automates time consuming manual processes, shortens workflow, and eliminates the threat of lost data in a faster, cheaper, and better environment than existing solutions. The system also provides the functionality and community features needed to analyze the large volumes of Next Generation Sequencing and Single Nucleotide Polymorphism data, which is generated for a wide range of purposes from disease tracking and animal breeding to medical diagnosis and treatment.

National Cancer Data Base

NCDB

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The nationally recognized National Cancer Database (NCDB)—jointly sponsored by the American College of Surgeons and the American Cancer Society—is a clinical oncology database sourced from hospital registry data that are collected in more than 1,500 Commission on Cancer (CoC)-accredited facilities. NCDB data are used to analyze and track patients with malignant neoplastic diseases, their treatments, and outcomes. Data represent more than 70 percent of newly diagnosed cancer cases nationwide and more than 34 million historical records.

IANUS Datenportal

Digitale Forschungsdaten aus Archäologie & Altertumswissenschaften

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IANUS is a DFG-funded project to set up a national research data center for archeology and ancient science in Germany.

EMEP

The European Monitoring and Evaluation Programme

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The European Monitoring and Evaluation Programme (EMEP) is a scientifically based and policy driven programme under the Convention on Long-range Transboundary Air Pollution (CLRTAP) for international co-operation to solve transboundary air pollution problems.

Site Survey Data Bank

SSDB

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The Site Survey Data Bank (SSDB) is a repository for site survey data submitted in support of International Ocean Discovery Program (IODP) proposals and expeditions. SSDB serves different roles for different sets of users.

Fordatis

Research Data Repository of Fraunhofer-Gesellschaft

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Fordatis is the institutional research data repository of the Fraunhofer-Gesellschaft. Fraunhofer-Gesellschaft based in Germany is Europes largest research and technology organization. Fordatis contains research data created by researcher at Fraunhofer. These are data from the engineering, natural sciences and social sciences.

Archaeological Map of the Czech Republic

Archeologická mapa České republiky

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The Archaeological Map of the Czech Republic (AMCR) is a repository designed for information on archaeological investigations, sites and finds, operated by the Archaeological Institutes of the CAS in Prague and Brno. The archives of these institutions contain documentation of archaeological fieldwork on the territory of the Czech Republic from 1919 to the present day, and they continue to enrich their collections. The AMCR database and related documents form the largest collection of archaeological data concerning the Czech Republic and are therefore an important part of our cultural heritage. The AMCR digital archive contains various types of records - individual archaeological documents (texts, field photographs, aerial photographs, maps and plans, digital data), projects, fieldwork events, archaeological sites, records of individual finds and a library of 3D models. Data and descriptive information are continuously taken from the AMCR and presented in the the AMCR Digital Archive interface.

University of Southampton Institutional Research Repository

ePrints Soton

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ePrints Soton is the University's Research Repository. It contains journal articles, books, PhD theses, conference papers, data, reports, working papers, art exhibitions and more. Where possible, journal articles, conference proceedings and research data made open access.

UniProtKB

UniProtKnowledgebase

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The UniProt Knowledgebase (UniProtKB) is the central hub for the collection of functional information on proteins, with accurate, consistent and rich annotation. In addition to capturing the core data mandatory for each UniProtKB entry (mainly, the amino acid sequence, protein name or description, taxonomic data and citation information), as much annotation information as possible is added. This includes widely accepted biological ontologies, classifications and cross-references, and clear indications of the quality of annotation in the form of evidence attribution of experimental and computational data. The Universal Protein Resource (UniProt) is a comprehensive resource for protein sequence and annotation data. The UniProt databases are the UniProt Knowledgebase (UniProtKB), the UniProt Reference Clusters (UniRef), and the UniProt Archive (UniParc). The UniProt Metagenomic and Environmental Sequences (UniMES) database is a repository specifically developed for metagenomic and environmental data. The UniProt Knowledgebase,is an expertly and richly curated protein database, consisting of two sections called UniProtKB/Swiss-Prot and UniProtKB/TrEMBL.

Portal de Datos Abiertos UNAM, Colecciones Universitarias

UNAM Open Data Portal

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The UNAM opens the door to share millions of open data for the benefit of education and research. With this portal (www.datosabiertos.unam.mx) the university shares records of digital collections, academic research projects, repositories and publications to generate new knowledge. This way, it works as an online access point to search university collections authorized for their use, reuse and free redistribution by anyone, without copyright restrictions, patents or other control mechanisms, as long as the Terms of Free Use for UNAM Open Data are respected. The UNAM Open Data Portal contains data, digital objects and geospatial layers of biological collections, artistic work, music, veterinary medicine, university projects, among others. It allows databases to be consulted and downloaded in open and structured formats. One of the most outstanding collections is the National Herbarium of Mexico (MEXU), with almost two million records and high resolution images of plants around the world, mainly collected in Mexico. MEXU is the largest herbarium in the country and in Latin America; it’s among one of the ten most active herbariums in the world.

Natural History Museum, Data Portal

Explore and download the Natural History Museum’s research and collections data

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The Museum is committed to open access and open science, and has launched the Data Portal to make its research and collections datasets available online. It allows anyone to explore, download and reuse the data for their own research. Our natural history collection is one of the most important in the world, documenting 4.5 billion years of life, the Earth and the solar system. Almost all animal, plant, mineral and fossil groups are represented. These datasets will increase exponentially. Under the Museum's ambitious digital collections programme we aim to have 20 million specimens digitised in the next five years.

GLOBE

Global Collaboration Engine

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GLOBE (Global Collaboration Engine) is an online collaborative environment that enables land change researchers to share, compare and integrate local and regional studies with global data to assess the global relevance of their work.

Open Data by Socrata

Socrata

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>>>!!!<<< This site is going away on April 1, 2021. General access to the site has been disabled and community users will see an error upon login. >>>!!!<<< Socrata’s cloud-based solution allows government organizations to put their data online, make data-driven decisions, operate more efficiently, and share insights with citizens.

Project Achilles

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Project Achilles is a systematic effort aimed at identifying and cataloging genetic vulnerabilities across hundreds of genomically characterized cancer cell lines. The project uses genome-wide genetic perturbation reagents (shRNAs or Cas9/sgRNAs) to silence or knock-out individual genes and identify those genes that affect cell survival. Large-scale functional screening of cancer cell lines provides a complementary approach to those studies that aim to characterize the molecular alterations (e.g. mutations, copy number alterations) of primary tumors, such as The Cancer Genome Atlas (TCGA). The overall goal of the project is to identify cancer genetic dependencies and link them to molecular characteristics in order to prioritize targets for therapeutic development and identify the patient population that might benefit from such targets. Project Achilles data is hosted on the Cancer Dependency Map Portal (DepMap) where it has been harmonized with our genomics and cellular models data. You can access the latest and all past datasets here: https://depmap.org/portal/download/all/

SURFRAD

Surface Radiation

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To understand the global surface energy budget is to understand climate. Because it is impractical to cover the earth with monitoring stations, the answer to global coverage lies in reliable satellite-based estimates. Efforts are underway at NASA and universities to develop algorithms to do this, but such projects are in their infancy. In concert with these ambitious efforts, accurate and precise ground-based measurements in differing climatic regions are essential to refine and verify the satellite-based estimates, as well as to support specialized research. To fill this niche, the Surface Radiation Budget Network (SURFRAD) was established in 1993 through the support of NOAA's Office of Global Programs.

Codex

A comprehensive and functional compendium of Next Generation Sequencing experiments.

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CODEX is a database of NGS mouse and human experiments. Although, the main focus of CODEX is Haematopoiesis and Embryonic systems, the database includes a large variety of cell types. In addition to the publically available data, CODEX also includes a private site hosting non-published data. CODEX provides access to processed and curated NGS experiments. To use CODEX: (i) select a specialized repository (HAEMCODE or ESCODE) or choose the whole compendium (CODEX), then (ii) filter by organism and (iii) choose how to explore the database.

ESRF Portal

European Synchrotron Radiation Facility Data Repository

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Explore, search, and download data and metadata from your experiments and from public Open Data. The ESRF data repository is intended to store and archive data from photon science experiments done at the ESRF and to store digital material like documents and scientific results which need a DOI and long term preservation. Data are made public after an embargo period of maximum 3 years.

Southern California Earthquake Data Center

SCEDC

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The Southern California Earthquake Data Center (SCEDC) operates at the Seismological Laboratory at Caltech and is the primary archive of seismological data for southern California. The 1932-to-present Caltech/USGS catalog maintained by the SCEDC is the most complete archive of seismic data for any region in the United States. Our mission is to maintain an easily accessible, well-organized, high-quality, searchable archive for research in seismology and earthquake engineering.

Brown Digital Repository

BDR

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The Brown Digital Repository (BDR) is a place to gather, index, store, preserve, and make available digital assets produced via the scholarly, instructional, research, and administrative activities at Brown.

Kinsources.net

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Kinsources is an open and interactive platform to archive, share, analyze and compare kinship data used in scientific research. Kinsources is not just another genealogy website, but a peer-reviewed repository designed for comparative and collaborative research. The aim of Kinsources is to provide kinship studies with a large and solid empirical base. Kinsources combines the functionality of communal data repository with a toolbox providing researchers with advanced software for analyzing kinship data. The software Puck (Program for the Use and Computation of Kinship data) is integrated in the statistical package and the search engine of the Kinsources website. Kinsources is part of a research perspective that seeks to understand the interaction between genealogy, terminology and space in the emergence of kinship structures. Hosted by the TGIR HumaNum, the platform ensures both security and free access to the scientific data is validated by the research community.

National Data Repository

NDR - National Data Repository India

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National Data Repository (NDR) is a reliable and integrated data repository of Exploration and Production (E&P) data of Indian sedimentary basins. It offers a unique platform to all concerns of E&P with provisions for seamless access to reliable geo-scientific data for India. Streamlining all associated procedures, policies and workflows pertaining to data submission, data management, data retrieval for all concerned pertaining to government agencies, academia and research communities with restrictions. NDR is owned by the Government of India, hosted at Directorate General of Hydrocarbons (DGH), Ministry of Petroleum and Natural Gas (MoPNG). Objectively it operates with geological data, petrophysical data, natural gas, seismic data, well & log data, spatial data, Reservoir data, Gravity & Magnetic data. NDR maintains and preserve hydrocarbon exploration & production data in a standard and reusable manner, but can't made available to entitled users freely. One cannot get access independently.

University of Prince Edward Island Data (Beta)

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Built on the Islandora digital repository framework, the UPEI hosted Published and Archived Data (data.upei.ca) service provides researchers with a place to securely publish or archive their research datasets.

Nasa's Data Portal

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DATA.NASA.GOV is NASA's clearinghouse site for open-data provided to the public. Tens of thousands of datasets are available for you. This site is a continually growing catalog of publicly available NASA Datasets, APIs, Visualizations, and more.

Lancaster University Research Directory

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Here you can find out more about Lancaster’s world-class research activities, view details of publications, outputs and awards and make contact with our researchers.

BioVel

Biodiversity Virtual e-Laboratory

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<<<!!!<<< This repository is no longer available. >>>!!!>>> BioVeL is a virtual e-laboratory that supports research on biodiversity issues using large amounts of data from cross-disciplinary sources. BioVeL supports the development and use of workflows to process data. It offers the possibility to either use already made workflows or create own. BioVeL workflows are stored in MyExperiment - Biovel Group http://www.myexperiment.org/groups/643/content. They are underpinned by a range of analytical and data processing functions (generally provided as Web Services or R scripts) to support common biodiversity analysis tasks. You can find the Web Services catalogued in the BiodiversityCatalogue.