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Found 17 result(s)

BioPortal

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BioPortal is an open repository of biomedical ontologies, a service that provides access to those ontologies, and a set of tools for working with them. BioPortal provides a wide range of such tools, either directly via the BioPortal web site, or using the BioPortal web service REST API. BioPortal also includes community features for adding notes, reviews, and even mappings to specific ontologies. BioPortal has four major product components: the web application; the API services; widgets, or applets, that can be installed on your own site; and a Virtual Appliance version that is available for download or through Amazon Web Services machine instance (AMI). There is also a beta release SPARQL endpoint.

Flora von Bayern: Wiki and Data Portal

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The "Flora of Bavaria" initiative with its data portal (14 million occurrence data) and Wiki representation is primarily a citizen science project. Efforts to describe and monitor the flora of Bavaria have been ongoing for 100 years. The goal of these efforts is to record all vascular plants, including newcomers, and to document threatened or former local occurrences. Being geographically largest state of Germany with a broad range of habitats, Bavaria has a special responsibility for documenting and maintaining its plant diversity . About 85% of all German vascular plant species occur in Bavaria, and in addition it has about 50 endemic taxa, only known from Bavaria (most of them occur in the Alps). The Wiki is collaboration of volunteers and local and regional Bavarian botanical societies. Everybody is welcome to contribute, especially with photos or reports of local changes in the flora. The Flora of Bavaria project is providing access to a research data repository for occurrence data powered by the Diversity Workbench database framework.

Fluxnet - Fluxdata

FLUXNET (formerly)

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Vast networks of meteorological sensors ring the globe measuring atmospheric state variables, like temperature, humidity, wind speed, rainfall, and atmospheric carbon dioxide, on a continuous basis. These measurements serve earth system science by providing inputs into models that predict weather, climate and the cycling of carbon and water. And, they provide information that allows researchers to detect the trends in climate, greenhouse gases, and air pollution. The eddy covariance method is currently the standard method used by biometeorologists to measure fluxes of trace gases between ecosystems and atmosphere.

ITER Database

International Toxicity Estimates for Risk Assessment

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ITER is an Internet database of human health risk values and cancer classifications for over 680 chemicals of environmental concern from multiple organizations wordwide. ITER is the only database that presents risk data in a tabular format for easy comparison, along with a synopsis explaining differences in data and a link to each organization for more information.

Tethys

Tethys RDR

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Tethys is an Open Access Research Data Repository of the GeoSphere Austria, which publishes and distributes georeferenced geoscientific research data generated at and in cooperation with the GeoSphere Austria. The research data publications and the associated metadata are predominantly provided in German or in English. The abstracts are provided in both languages. Tethys aims to provide published data sets as open data and in accordance with the FAIR Data Principles, findable, accessible, interoperable and reusable.

The Cancer Imaging Archive

TCIA

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TCIA is a service which de-identifies and hosts a large archive of medical images of cancer accessible for public download. The data are organized as “collections”; typically patients’ imaging related by a common disease (e.g. lung cancer), image modality or type (MRI, CT, digital histopathology, etc) or research focus. Supporting data related to the images such as patient outcomes, treatment details, genomics and expert analyses are also provided when available.

DEPOD

DEPhOsphorylation Database

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DEPOD - the human DEPhOsphorylation Database (version 1.1) is a manually curated database collecting human active phosphatases, their experimentally verified protein and non-protein substrates and dephosphorylation site information, and pathways in which they are involved. It also provides links to popular kinase databases and protein-protein interaction databases for these phosphatases and substrates. DEPOD aims to be a valuable resource for studying human phosphatases and their substrate specificities and molecular mechanisms; phosphatase-targeted drug discovery and development; connecting phosphatases with kinases through their common substrates; completing the human phosphorylation/dephosphorylation network.

Constituency-Level Elections Archive

CLEA

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The Constituency-Level Elections Archive (CLEA) is a repository of detailed election results at the constituency level for lower house legislative elections from around the world. Our motivation is to preserve and consolidate these valuable data in one comprehensive and reliable resource that is ready for analysis and publicly available at no cost. This public good is expected to be of use to a range of audiences for research, education, and policy-making.

HyMeX

HYdrological cycle in the Mediterranean EXperiemnt

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HYdrological cycle in the Mediterranean EXperiemnt. Considering the science and societal issues motivating HyMeX, the programme aims to : improve our understanding of the water cycle, with emphasis on extreme events, by monitoring and modelling the Mediterranean atmosphere-land-ocean coupled system, its variability from the event to the seasonal and interannual scales, and its characteristics over one decade (2010-2020) in the context of global change, assess the social and economic vulnerability to extreme events and adaptation capacity.The multidisciplinary research and the database developed within HyMeX should contribute to: improve observational and modelling systems, especially for coupled systems, better predict extreme events, simulate the long-term water-cycle more accurately, provide guidelines for adaptation measures, especially in the context of global change.

European MassBank

MassBank

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Database of mass spectra of known, unknown and provisionally identified substances. MassBank is the first public repository of mass spectral data for sharing them among scientific research community. MassBank data are useful for the chemical identification and structure elucidation of chemical compounds detected by mass spectrometry.

University Hospital Medical Information Network Individual Case Data Repository

UMIN-CTR

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The UMIN case data repository system was implemented by adding a function to the UMIN Clinical Trials Registry System. The aim of this system is to keep anonymized case data from clinical research conducted by individual researchers at the UMIN center, and to guarantee the content of the data to third parties. This system enables other researchers to inspect case data or to repeat statistical analyses

PATRIC

Pathosystems Resource Integration Center

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<<<!!!<<< This repository is no longer available. >>>!!!>>> PATRIC will go offline by mid-December2022. Here is what you need to know. As announced previously, PATRIC, the bacterial BRC, and IRD / ViPR, the viral BRCs, are being merged into the new Bacterial and Viral Bioinformatics Resource Center (BV-BRC). BV-BRC combines the data, tools, and technologies from these BRCs to provide an integrated resource for bacterial and viral genomics-based infectious disease research.

DIAMM

Digital Image Archive of Medieval Music

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DIAMM (the Digital Image Archive of Medieval Music) is a leading resource for the study of medieval manuscripts. We present images and metadata for thousands of manuscripts on this website. We also provide a home for scholarly resources and editions, undertake digital restoration of damaged manuscripts and documents, publish high-quality facsimiles, and offer our expertise as consultants.

York Digital Library

YODL

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York Digital Library (YODL) is a University-wide Digital Library service for multimedia resources used in or created through teaching, research and study at the University of York. YODL complements the University's research publications, held in White Rose Research Online and PURE, and the digital teaching materials in the University's Yorkshare Virtual Learning Environment. YODL contains a range of collections, including images, past exam papers, masters dissertations and audio. Some of these are available only to members of the University of York, whilst other material is available to the public. YODL is expanding with more content being added all the time

LIPID MAPS

LIPID Metabolites And Pathways Strategy

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Tthe Lipidomics Gateway - a free, comprehensive website for researchers interested in lipid biology, provided by the LIPID MAPS (Lipid Metabolites and Pathways Strategy) Consortium. The LIPID MAPS Lipidomics Gateway provides a rich collection of information and resources to help you stay abreast of the latest developments in this rapidly expanding field. LIPID Metabolites And Pathways Strategy (LIPID MAPS®) is a multi-institutional effort created in 2003 to identify and quantitate, using a systems biology approach and sophisticated mass spectrometers, all of the major — and many minor — lipid species in mammalian cells, as well as to quantitate the changes in these species in response to perturbation. The ultimate goal of our research is to better understand lipid metabolism and the active role lipids play in diabetes, stroke, cancer, arthritis, Alzheimer's and other lipid-based diseases in order to facilitate development of more effective treatments. Since our inception, we have made great strides toward defining the "lipidome" (an inventory of the thousands of individual lipid molecular species) in the mouse macrophage. We have also worked to make lipid analysis easier and more accessible for the broader scientific community and to advance a robust research infrastructure for the international research community. We share new lipidomics findings and methods, hold annual meetings open to all interested investigators, and are exploring joint efforts to extend the use of these powerful new methods to new applications

Pathway Commons

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Pathway Commons is a convenient point of access to biological pathway information collected from public pathway databases. Information is sourced from public pathway databases and is readily searched, visualized, and downloaded. The data is freely available under the license terms of each contributing database.

NIRD Research Data Archive

NIRD Archive

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The NIRD Research Data Archive is a repository that provides long-term storage for research data and is compliant with the Open Archival Information System (OAIS) reference model . The aim of the archive is to provide (public) access to published research data and to promote cross-disciplinary studies. The NIRD Research Data Archive (NIRD Archive) is in full production. The NIRD Archive will operate on a “subject to approval” basis and will accept any type of research data from Norwegian academically funded projects that is no longer considered proprietary.