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Found 203 result(s)

Mammalian Transcriptomic Database

MTD

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MTD is focused on mammalian transcriptomes with a current version that contains data from humans, mice, rats and pigs. Regarding the core features, the MTD browses genes based on their neighboring genomic coordinates or joint KEGG pathway and provides expression information on exons, transcripts, and genes by integrating them into a genome browser. We developed a novel nomenclature for each transcript that considers its genomic position and transcriptional features.

ErythronDB

Erythron Database

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<<<!!!<<< The original ErythronDB site is now retired! Code for generating the web site is available here https://github.com/ErythronDB/erythrondb-docker. >>>!!!>>>

Plasma Physics Data Center

Centre de Données de la Physique de Plasma

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The CDPP is the French national data centre for natural plasmas of the solar system. The CDPP assures the long term preservation of data obtained primarily from instruments built using French resources, and renders them readily accessible and exploitable by the international community. The CDPP also provides services to enable on-line data analysis (AMDA), 3D data visualization in context (3DView), and a propagation tool which bridges solar perturbations to in-situ measurements. The CDPP is involved in the development of interoperability, participates in several Virtual Observatory projects, and supports data distribution for scientific missions (Solar Orbiter, JUICE).

City of Victoria Open Data Portal

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The City of Victoria’s Open Data Portal allows you to explore and download open data, discover and analyze datasets using maps, and develop new web and mobile applications.

Lok Dhaba

Lok Dhaba Food For Political Thought

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The Centre conducts real-time data collection on all ongoing and incoming General and Assembly Elections, and diffuses data-driven analysis through print and electronic media. The coverage includes the analysis, contextualization, and visualisation of results and the profiling of main parties candidates. For each election, we assemble a team of field researchers and scholars to complete and expand existing data. Besides the ECI results data, we collect information on the socio-demographic profile of main parties’ candidates and on the sociological profile of constituencies.

Environmental data explorer

EDE

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<<<!!!<<< This repository is no longer available. Resource Unavailable The requested url (http://geodata.grid.unep.ch/) no longer exists, please contact info@unepgrid.ch for further information.. >>>!!!>>>

World Data Centre for Precipitation Chemistry

WDCPC

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This centre receives and archives precipitation chemistry data and complementary information from stations around the world. Data archived by this centre are accessible via connections with the WDCPC database. Freely available data from regional and national programmes with their own Web sites are accessible via links to these sites. The WDCPC is one of six World Data Centres in the World Meteorological Organization Global Atmosphere Watch (GAW). The focus on precipitation chemistry is described in the GAW Precipitation Chemistry Programme. Guidance on all aspects of collecting precipitation for chemical analysis is provided in the Manual for the GAW Precipitation Chemistry Programme (WMO-GAW Report No. 160).

SILVA

A comprehensive on-line resource for quality checked and aligned ribosomal RNA sequence data.

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SILVA is a comprehensive, quality-controlled web resource for up-to-date aligned ribosomal RNA (rRNA) gene sequences from the Bacteria, Archaea and Eukaryota domains alongside supplementary online services. In addition to data products, SILVA provides various online tools such as alignment and classification, phylogenetic tree calculation and viewer, probe/primer matching, and an amplicon analysis pipeline. With every full release a curated guide tree is provided that contains the latest taxonomy and nomenclature based on multiple references. SILVA is an ELIXIR Core Data Resource.

SuperDARN

Super Dual Auroral Radar Network

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SuperDARN is an international HF radar network designed to measure global-scale magnetospheric convection by observing plasma motion in the Earth’s upper atmosphere. This network consists of more than 20 radars operating on frequencies between 8 and 20 MHz that look into the polar regions of Earth. These radars can measure the position and velocity of charged particles in our ionosphere, the highest layer of the Earth's atmosphere, and provide scientists with information regarding Earth's interaction with the space environment.

Protected Planet

World Database on Protected Areas

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Protectedplanet.net combines crowd sourcing and authoritative sources to enrich and provide data for protected areas around the world. Data are provided in partnership with the World Database on Protected Areas (WDPA). The data include the location, designation type, status year, and size of the protected areas, as well as species information.

Cancer Genomics Hub

CGHub

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>>>>!!!!<<<< The Cancer Genomics Hub mission is now completed. The Cancer Genomics Hub was established in August 2011 to provide a repository to The Cancer Genome Atlas, the childhood cancer initiative Therapeutically Applicable Research to Generate Effective Treatments and the Cancer Genome Characterization Initiative. CGHub rapidly grew to be the largest database of cancer genomes in the world, storing more than 2.5 petabytes of data and serving downloads of nearly 3 petabytes per month. As the central repository for the foundational genome files, CGHub streamlined team science efforts as data became as easy to obtain as downloading from a hard drive. The convenient access to Big Data, and the collaborations that CGHub made possible, are now essential to cancer research. That work continues at the NCI's Genomic Data Commons. All files previously stored at CGHub can be found there. The Website for the Genomic Data Commons is here: https://gdc.nci.nih.gov/ >>>>!!!!<<<< The Cancer Genomics Hub (CGHub) is a secure repository for storing, cataloging, and accessing cancer genome sequences, alignments, and mutation information from the Cancer Genome Atlas (TCGA) consortium and related projects. Access to CGHub Data: All researchers using CGHub must meet the access and use criteria established by the National Institutes of Health (NIH) to ensure the privacy, security, and integrity of participant data. CGHub also hosts some publicly available data, in particular data from the Cancer Cell Line Encyclopedia. All metadata is publicly available and the catalog of metadata and associated BAMs can be explored using the CGHub Data Browser.

Clouds and the Earth's Radiant Energy System

CERES Data Products

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The Clouds and the Earth’s Radiant Energy System (CERES) is a key component of the Earth Observing System (EOS) program. CERES instruments provide radiometric measurements of the Earth’s atmosphere from three broadband channels. CERES products include both solar-reflected and Earth-emitted radiation from the top of the atmosphere to the Earth's surface.

CEPDB

The Harvard Clean Energy Project Database

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-----<<<<< The repository is no longer available. This record is out-dated. The Matter lab provides the archived database version of 2012 and 2013 at https://www.matter.toronto.edu/basic-content-page/data-download. Data linked from the World Community Grid - The Clean Energy Project see at https://www.worldcommunitygrid.org/research/cep1/overview.do and on fighshare https://figshare.com/articles/dataset/moldata_csv/9640427 >>>>>----- The Clean Energy Project Database (CEPDB) is a massive reference database for organic semiconductors with a particular emphasis on photovoltaic applications. It was created to store and provide access to data from computational as well as experimental studies, on both known and virtual compounds. It is a free and open resource designed to support researchers in the field of organic electronics in their scientific pursuits. The CEPDB was established as part of the Harvard Clean Energy Project (CEP), a virtual high-throughput screening initiative to identify promising new candidates for the next generation of carbon-based solar cell materials.

USGS National Water Information System

NWIS

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Central data management of the USGS for water data that provides access to water-resources data collected at approximately 1.5 million sites in all 50 States, the District of Columbia, Puerto Rico, the Virgin Islands, Guam, American Samoa and the Commonwealth of the Northern Mariana Islands. Includes data on water use and quality, groundwater, and surface water.

Centers for Disease Control and Prevention, Data & Statistics

CDC

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CDC.gov is the Centers for Disease Control and Prevention primary online communication channel. CDC.gov provides users with credible, reliable health information on Data and Statistics, Diseases and Conditions, Emergencies and Disasters, Environmental Health, Healthy Living, Injury, Violence and Safety,Life Stages and Populations, Travelers' Health, Workplace Safety and Health

Harvard Medical School, Library of Integrated Network-Based Cellular Signatures Database

HMS, LINCS database

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The Database contains all publicly available HMS LINCS datasets and information for each dataset about experimental reagents (small molecule perturbagens, cells, antibodies, and proteins) and experimental and data analysis protocols.

Research Centre of the Bundesbank

Forschungszentrum der Deutschen Bundesbank

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<<<!!!<<< The pages were merged. Please use "Forschungsdaten- und Servicezentrum der Bundesbank" https://www.re3data.org/repository/r3d100012252 >>>!!!<<<

Russian-Ukrainian Geomagnetic Data Center

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The Analytical Geomagnetic Data Center of the Trans-Regional INTERMAGNET Segment is operated by the Geophysical Center of the Russian Academy of Sciences (GC RAS). Geomagnetic data are transmitted from observatories and stations located in Russia and near-abroad countries. The Center also provides access to spaceborne data products. The MAGNUS hardware-software system underlies the operation of the Center. Its particular feature is the automated real-time recognition of artificial (anthropogenic) disturbances in incoming data. Being based on fuzzy logic approach, this quality control service facilitates the preparation of the definitive magnetograms from preliminary records carried out by data experts manually. The MAGNUS system also performs on-the-fly multi-criteria estimation of geomagnetic activity using several indicators and provides online tools for modeling electromagnetic parameters in the near-Earth space. The collected geomagnetic data are stored using relational database management system. The geomagnetic database is intended for storing both 1-minute and 1-second data. The results of anthropogenic and natural disturbance recognition are also stored in the database.

International HapMap Project

国际人类基因组单体型图计划

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<<<!!!<<< OFFLINE >>>!!!>>> A recent computer security audit has revealed security flaws in the legacy HapMap site that require NCBI to take it down immediately. We regret the inconvenience, but we are required to do this. That said, NCBI was planning to decommission this site in the near future anyway (although not quite so suddenly), as the 1,000 genomes (1KG) project has established itself as a research standard for population genetics and genomics. NCBI has observed a decline in usage of the HapMap dataset and website with its available resources over the past five years and it has come to the end of its useful life. The International HapMap Project is a multi-country effort to identify and catalog genetic similarities and differences in human beings. Using the information in the HapMap, researchers will be able to find genes that affect health, disease, and individual responses to medications and environmental factors. The Project is a collaboration among scientists and funding agencies from Japan, the United Kingdom, Canada, China, Nigeria, and the United States. All of the information generated by the Project will be released into the public domain. The goal of the International HapMap Project is to compare the genetic sequences of different individuals to identify chromosomal regions where genetic variants are shared. By making this information freely available, the Project will help biomedical researchers find genes involved in disease and responses to therapeutic drugs. In the initial phase of the Project, genetic data are being gathered from four populations with African, Asian, and European ancestry. Ongoing interactions with members of these populations are addressing potential ethical issues and providing valuable experience in conducting research with identified populations. Public and private organizations in six countries are participating in the International HapMap Project. Data generated by the Project can be downloaded with minimal constraints. The Project officially started with a meeting in October 2002 (https://www.genome.gov/10005336/) and is expected to take about three years.

TheDataWeb

DataFerrett

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<<<!!!<<< This repository is no longer available. >>>!!!>>> Be advised that DataFerrett was decommissioned June 30, 2020; see https://www.census.gov/data/data-tools/dataferrett.html

The Adaptive Evolution Database

TAED

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TAED is a database of phylogenetically indexed gene families. It contains multiple sequence alignments from MAFFT1, maximum likelihood phylogenetic trees from PhyML2, bootstrap values for each node, dN/dS ratios for each lineage from the free ratios model in PAML3, and labels for each node of speciation or duplication from gene tree/species tree reconciliation using SoftParsMap4. The phylogenetic indexing enables simultaneous viewing of lineages with high dN/dS that occurred along the same species tree branches. Resources from the Protein Data Bank (PDB) and the Kyoto Encyclopedia of Genes and Genomes (KEGG)5, have been incorporated into the TAED analysis to detect substitutions along each branch within the phylogenetic tree and to assess selection within pathways.

Canadian Disaster Database

Base de données canadienne sur les catastrophes

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The Canadian Disaster Database (CDD) contains detailed disaster information on more than 1000 natural, technological and conflict events (excluding war) that have happened since 1900 at home or abroad and that have directly affected Canadians. Message since 2022-01: The Canadian Disaster Database geospatial view is temporarily out of service. We apologize for the inconvenience. The standard view of the database is still available.

The MaxQuant DataBase

MaxQB

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MaxQB stores and displays collections of large proteomics projects and allows joint analysis and comparison. As a first dataset is contains proteome data of 11 different human cell lines. The 11 cell line proteomes together identify proteins expressed from more than half of all human genes. For each protein of interest, expression levels estimated by label-free quantification can be visualized across the cell lines. Similarly, the expression rank order and estimated amount of each protein within each proteome are plotted.

The Cancer Immunome Atlas

TCIA

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The Cancer Immunome Database (TCIA) provides results of comprehensive immunogenomic analyses of next generation sequencing data (NGS) data for 20 solid cancers from The Cancer Genome Atlas (TCGA) and other datasource. The Cancer Immunome Atlas (TCIA) was developed and is maintained at the Division of Bioinformatics (ICBI). The database can be queried for the gene expression of specific immune-related gene sets, cellular composition of immune infiltrates (characterized using gene set enrichment analyses and deconvolution), neoantigens and cancer-germline antigens, HLA types, and tumor heterogeneity (estimated from cancer cell fractions). Moreover it provides survival analyses for different types immunological parameters. TCIA will be constantly updated with new data and results.

Pfam Protein Families

Pfam

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The Pfam database is a large collection of protein families, each represented by multiple sequence alignments and hidden Markov models (HMMs). !!! Powering down the Pfam website On October 5th, redirecting the traffic from Pfam (pfam.xfam.org) to InterPro (www.ebi.ac.uk/interpro) will start. The Pfam website will be available at legacy.pfam.xfam.org until January 2023, when it will be decommissioned. You can read more about the sunset period in the blog post (https://xfam.wordpress.com/2022/08/04/pfam-website-decommission/). !!!