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Found 25 result(s)
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<<<!!!<<< This repository is no longer available. >>>!!!>>> A human interactome map. The sequencing of the human genome has provided a surprisingly small number of genes, indicating that the complex organization of life is not reflected in the gene number but, rather, in the gene products – that is, in the proteins. These macromolecules regulate the vast majority of cellular processes by their ability to communicate with each other and to assemble into larger functional units. Therefore, the systematic analysis of protein-protein interactions is fundamental for the understanding of protein function, cellular processes and, ultimately, the complexity of life. Moreover, interactome maps are particularly needed to link new proteins to disease pathways and the identification of novel drug targets.
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The Health Atlas is an alliance of medical ontologists, medical systems biologists and clinical trials groups to design and implement a multi-functional and quality-assured atlas. It provides models, data and metadata on specific use cases from medical research projects from the partner institutions.
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The Bach portal is a database for researchers and practical musicians interested in Johann Sebastian Bach and the whole Bach family. It contains detailed, fully searchable findings from research into Bach and high-resolution scans of works and sources.
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STRING is a database of known and predicted protein interactions.
The interactions include direct (physical) and indirect (functional) associations; they are derived from four sources:
- Genomic Context
- High-throughput Experiments
- (Conserved) Coexpression
- Previous Knowledge
STRING quantitatively integrates interaction data from these sources for a large number of organisms, and transfers information between these organisms where applicable.
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<<<!!!<<< This MultiDark application is now integrated into CosmoSim (https://www.cosmosim.org/ , all data and much more is available there. The old MultiDark server is no longer available. >>>!!!>>>
The MultiDark database provides results from cosmological simulations performed within the MultiDark project. This database can be queried by entering SQL statements directly into the Query Form. The access to that form and thus access to the public & private databases is password protected.
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A place where researchers can publicly store and share unthresholded statistical maps, parcellations, and atlases produced by MRI and PET studies.
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MetaCrop is a database that summarizes diverse information about metabolic pathways in crop plants and allows automatic export of information for the creation of detailed metabolic models. MetaCrop is a database that contains manually curated, highly detailed information about metabolic pathways in crop plants, including location information, transport processes and reaction kinetics.
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The GAVO data centre at Zentrum für Astronomie Heidelberg publishes astronomical data of all kinds – e.g., catalogues, images, spectra, time series, simulation results – in accordance with Virtual Observatory standards, making them findable and immediately usable through popular clients like TOPCAT, Aladin, or programatically through the astropy-affiliated package pyVO or the Java library STIL. We pay particular attention to providing thorough metadata to the VO Registry in order to facilitate discovery and reuse.
While we have a clear focus on data produced with German contributions, we will usually publish data of other provenance, too. See https://docs.g-vo.org/DaCHS/data_checklist.html for an overview of what resource-level metadata we ask for; contact us for further information on how to publish through the German Astronomical Virtual Observatory.
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The Répertoire International des Sources Musicales (RISM) - International Inventory of Musical Sources - is an international, non-profit organization that aims to comprehensively document extant musical sources worldwide. These primary sources are music manuscripts or printed music editions, writings on music theory, and libretti. They are preserved in libraries, archives, churches, schools and private collections.
RISM was founded in Paris in 1952 and is the largest and only international organization that documents written musical sources. RISM records what exists and where it can be found. As a result, by virtue of being cataloged in a comprehensive inventory, music traditions are protected while also being made available to musicologists and musicians alike. Such work is thus not an end in itself, but leads directly to practical applications.
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The GISAID Initiative promotes the international sharing of all influenza virus sequences, related clinical and epidemiological data associated with human viruses, and geographical as well as species-specific data associated with avian and other animal viruses, to help researchers understand how the viruses evolve, spread and potentially become pandemics.
*** GISAID does so by overcoming disincentives/hurdles or restrictions, which discourage or prevented sharing of influenza data prior to formal publication.
*** The Initiative ensures that open access to data in GISAID is provided free-of-charge and to everyone, provided individuals identify themselves and agree to uphold the GISAID sharing mechanism governed through its Database Access Agreement. GISAID calls on all users to agree to the basic premise of upholding scientific etiquette, by acknowledging the originating laboratories providing the specimen and the submitting laboratories who generate the sequence data, ensuring fair exploitation of results derived from the data, and that all users agree that no restrictions shall be attached to data submitted to GISAID, to promote collaboration among researchers on the basis of open sharing of data and respect for all rights and interests.
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The human pluripotent stem cell registry (hPSCreg) is a public registry and data portal for human embryonic and induced pluripotent stem cell lines (hESC and hiPSC). The Registry provides comprehensive and standardized biological and legal information as well as tools to search and compare information from multiple hPSC sources and hence addresses a translational research need. To facilitate unambiguous identification over different resources, hPSCreg automatically creates a unique standardized name (identifier) for each cell line registered. In addition to biological information, hPSCreg stores extensive data about ethical standards regarding cell sourcing and conditions for application and privacy protection. hPSCreg is the first global registry that holds both, manually validated scientific and ethical information on hPSC lines, and provides access by means of a user-friendly, mobile-ready web application.
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The public MorpheusML model repository collects, curates, documents and tests computational models for multi-scale and multicellular biological systems. Model must be encoded in the model description language MorpheusML. Subsections of the repository distinguish published models from contributed non-published and example models. New models are simulated in Morpheus or Artistoo independently from the authors and results are compared to published results. Successful reproduction is documented on the model's webpage. Models in this repository are included into the CI and test pipelines for each release of the model simulator Morpheus to check and guarantee reproducibility of results across future simulator updates. The model’s webpage provides a History-link to all past model versions and edits that are automatically tracked via Git. Each model is registered with a unique and persistent ID of the format M..... The model description page (incl. the biological context and key results of that model), the model’s XML file, the associated paper, and all further files (often simulation result videos) connected with that model can be retrieved via a persistent URL of the format https://identifiers.org/morpheus/M.....
- for technical details on the citable ModelID please see https://registry.identifiers.org/registry/morpheus
- for the model definition standard MorpheusML please see https://doi.org/10.25504/FAIRsharing.78b6a6
- for the model simulator Morpheus please see https://morpheus.gitlab.io
- for the model simulator Artistoo please see https://artistoo.net/converter.html
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BRENDA is the main collection of enzyme functional data available to the scientific community worldwide. The enzymes are classified according to the Enzyme Commission list of enzymes. It is available free of charge for via the internet (http://www.brenda-enzymes.org/) and as an in-house database for commercial users (requests to our distributor Biobase). The enzymes are classified according to the Enzyme Commission list of enzymes. Some 5000 "different" enzymes are covered. Frequently enzymes with very different properties are included under the same EC number. BRENDA includes biochemical and molecular information on classification, nomenclature, reaction, specificity, functional parameters, occurrence, enzyme structure, application, engineering, stability, disease, isolation, and preparation. The database also provides additional information on ligands, which function as natural or in vitro substrates/products, inhibitors, activating compounds, cofactors, bound metals, and other attributes.
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More than 25 years ago FIZ Karlsruhe started depositing crystal structure data linked to publications in German journals. At that time it was irrelevant whether the deposited structures were organic or inorganic. Today FIZ Karlsruhe is responsible for storing the structure data of inorganic compounds. Organic structure data are stored by the Cambridge Crystallographic Data Center.
Nowadays many publishers inform their authors that in parallel to a publication in a scientific journal, crystal structure data should also be stored in the Crystal Structure Depot at FIZ Karlsruhe. A CSD number will be assigned to the data for later reference in the publication. The data can then be ordered from the Crystal Structure Depot at FIZ Karlsruhe.
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CMO is a long-term project for the critical edition of Near Eastern music manuscripts. The project focusing on manuscripts of Ottoman music written in Hampartsum and staff notations during the nineteenth century, is funded by the German Research Foundation (DFG).
This platform provides access to the online versions of both music and text editions, as well as the source catalogue, which is a comprehensive database of printed, manuscript and online sources.
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Discover provides access to research data from projects related to LMU Munich, which are stored and preserved in repositories of the University Library LMU.
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The main goal of the CLUES-project is to provide constrained simulations of the local universe designed to be used as a numerical laboratory of the current paradigm. The simulations will be used for unprecedented analysis of the complex dark matter and gasdynamical processes which govern the formation of galaxies. The predictions of these experiments can be easily compared with the detailed observations of our galactic neighborhood.
Some of the CLUES data is now publicly available via the CosmoSim database (https://www.cosmosim.org/). This includes AHF halo catalogues from the Box 64, WMAP3 resimulations of the Local Group with 40963 particle resolution.
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Publication of scans of photographic plates from the so-called "Potsdam zone" of the Carte du Ciel project (32 deg to 39 deg). A total of 977 plates of 2 square degree sky regions was observed and recorded between 1913 to 1924. Since Potsdam Observatory ended participation in the Carte du Ciel project, these observations were so far not analysed or published. Plates were scanned in by a flat bed scanner in 2007-2008. Limitations in astrometric precision as well are to be expected, and specific observational restrains apply, such as multiple exposures on certain plates (see literature)
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The Animal Sound Archive at the Museum für Naturkunde in Berlin is one of the oldest and largest collections of animal sounds. Presently, the collection consists of about 120,000 bioacoustical recordings comprising almost all groups of animals:
1.800 bird species
580 mammalian species
more then150 species of invertebrates;
some fishes, amphibians and reptiles
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The CosmoSim database provides results from cosmological simulations performed within different projects: the MultiDark and Bolshoi project, and the CLUES project.
The CosmoSim webpage provides access to several cosmological simulations, with a separate database for each simulation. Simulations overview: https://www.cosmosim.org/cms/simulations/simulations-overview/ .
CosmoSim is a contribution to the German Astrophysical Virtual Observatory.
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The Astrophysics Source Code Library (ASCL) is a free online registry for source codes of interest to astronomers and astrophysicists and lists codes that have been used in research that has appeared in, or been submitted to, peer-reviewed publications. The ASCL is citable by using the unique ascl ID assigned to each code. The ascl ID can be used to link to the code entry by prefacing the number with ascl.net (i.e., ascl.net/1201.001).
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An open resource for intermolecular interactions
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The COSYNA observatory measures key physical, sedimentary, geochemical and biological parameters at high temporal resolution in the water column and at the sediment and atmospheric boundaries.
COSYNA delivers spatial representation through a set of fixed and moving platforms, like tidal flats poles, FerryBoxes, gliders, ship surveys, towed devices, remote sensing, etc..
New technologies like underwater nodes, benthic landers and automated sensors for water biogeochemical parameters are further developed and tested.
A great variety of parameters is measured and processed, stored, analyzed, assimilated into models and visualized.
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In the Wolfenbüttel Digital Library the Herzog August Bibliothek presents in digital facsimile selected items from its collections which are rare, outstanding, frequently used, or currently most relevant for research. All digitized titles may be accessed not only here, but also via the PICA-OPAC as long as they are monographs. The OPAC allows you to search for digitized books separately by limiting the search options within the database using the term Online Resources.
Projects which provide additional indexing comprise a project-specific database, an inventory of digitized titles, information about tools and techniques, and references to literature. Here the main objective is to provide search facilities outside the scope of usual bibliographic description, such as page-related indexing.
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With the KIT Whole-Body Human Motion Database, we aim to provide a simple way of sharing high-quality motion capture recordings of human whole-body motion. In addition, with the Motion Annotation Tool (https://motion-annotation.humanoids.kit.edu/ ), we aim to collect a comprehensive set of whole-body motions along with natural language descriptions of these motions (https://motion-annotation.humanoids.kit.edu/dataset/).
- Current projects
- EOSC FAIR-IMPACT
- re3data COREF
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To the extent possible under law,
re3data.org
has waived all copyright and related or neighboring rights to
the database entries of re3data.org.
-
Except where otherwise noted, content on this site is licensed under a
Creative Commons Attribution 4.0 International License
.
- Cite this service: re3data.org - Registry of Research Data Repositories. https://doi.org/10.17616/R3D last accessed: 2024-04-20
