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Found 36 result(s)

caNanoLab

cancer Nanotechnology Laboratory

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caNanoLab is a data sharing portal designed to facilitate information sharing in the biomedical nanotechnology research community to expedite and validate the use of nanotechnology in biomedicine. caNanoLab provides support for the annotation of nanomaterials with characterizations resulting from physico-chemical and in vitro assays and the sharing of these characterizations and associated nanotechnology protocols in a secure fashion.

Magnetics Information Consortium

MagIC

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The Magnetics Information Consortium (MagIC) improves research capacity in the Earth and Ocean sciences by maintaining an open community digital data archive for rock magnetic, geomagnetic, archeomagnetic (archaeomagnetic) and paleomagnetic (palaeomagnetic) data. Different parts of the website allow users access to archive, search, visualize, and download these data. MagIC supports the international rock magnetism, geomagnetism, archeomagnetism (archaeomagnetism), and paleomagnetism (palaeomagnetism) research and endeavors to bring data out of private archives, making them accessible to all and (re-)useable for new, creative, collaborative scientific and educational activities. The data in MagIC is used for many types of studies including tectonic plate reconstructions, geomagnetic field models, paleomagnetic field reversal studies, magnetohydrodynamical studies of the Earth's core, magnetostratigraphy, and archeology. MagIC is a domain-specific data repository and directed by PIs who are both producers and consumers of rock, geo, and paleomagnetic data. Funded by NSF since 2003, MagIC forms a major part of https://earthref.org which integrates four independent cyber-initiatives rooted in various parts of the Earth, Ocean and Life sciences and education.

RDP

Ribosomal Database Project

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<<<!!!<<< The RDP website is no longer available. A stand-alone version of the RDP Classifier is available on Sorceforge https://sourceforge.net/projects/rdp-classifier/. Instructions for installing a command-line version of RDP Tools can be found at Dr. J.Quensen's Website https://john-quensen.com/tutorials/tutorial-1/ and https://jfq3.gitbook.io/rdptools-docker/rdptools-docker/readme. >>>!!!>>>

SumsDB

Surface management system database

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<<!! checked 20.03.2017 SumsDB was offline; for more information and archive see http://brainvis.wustl.edu/sumsdb/ >> SumsDB (the Surface Management System DataBase) is a repository of brain-mapping data (surfaces & volumes; structural & functional data) from many laboratories.

Advanced Cooperative Arctic Data and Information Service

ACADIS Gateway

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>>>>!!!<<<<As of March 28, 2016, the 'NSF Arctic Data Center' will serve as the current repository for NSF-funded Arctic data. The ACADIS Gateway http://www.aoncadis.org is no longer accepting data submissions. All data and metadata in the ACADIS system have been transferred to the NSF Arctic Data Center system. There is no need for you to resubmit existing data. >>>>!!!<<<< ACADIS is a repository for Arctic research data to provide data archival, preservation and access for all projects funded by NSF's Arctic Science Program (ARC). Data include long-term observational timeseries, local, regional, and system-scale research from many diverse domains. The Advanced Cooperative Arctic Data and Information Service (ACADIS) program includes data management services.

Human Proteinpedia

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Human Proteinpedia is a community portal for sharing and integration of human protein data. This is a joint project between Pandey at Johns Hopkins University, and Institute of Bioinformatics, Bangalore. This portal allows research laboratories around the world to contribute and maintain protein annotations. Human Protein Reference Database (HPRD) integrates data, that is deposited in Human Proteinpedia along with the existing literature curated information in the context of an individual protein. All the public data contributed to Human Proteinpedia can be queried, viewed and downloaded. Data pertaining to post-translational modifications, protein interactions, tissue expression, expression in cell lines, subcellular localization and enzyme substrate relationships may be deposited.

data.world

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A data repository and social network so that researchers can interact and collaborate, also offers tutorials and datasets for data science learning. "data.world is designed for data and the people who work with data. From professional projects to open data, data.world helps you host and share your data, collaborate with your team, and capture context and conclusions as you work."

LDbase

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A research data repository for the education and developmental sciences.

The Polinsky Language Sciences Lab Dataverse

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The Polinsky Language Sciences Lab at Harvard University is a linguistics lab that examines questions of language structure and its effect on the ways in which people use and process language in real time. We engage in linguistic and interdisciplinary research projects ourselves; offer linguistic research capabilities for undergraduate and graduate students, faculty, and visitors; and build relationships with the linguistic communities in which we do our research. We are interested in a broad range of issues pertaining to syntax, interfaces, and cross-linguistic variation. We place a particular emphasis on novel experimental evidence that facilitates the construction of linguistic theory. We have a strong cross-linguistic focus, drawing upon English, Russian, Chinese, Korean, Mayan languages, Basque, Austronesian languages, languages of the Caucasus, and others. We believe that challenging existing theories with data from as broad a range of languages as possible is a crucial component of the successful development of linguistic theory. We investigate both fluent speakers and heritage speakers—those who grew up hearing or speaking a particular language but who are now more fluent in a different, societally dominant language. Heritage languages, a novel field of linguistic inquiry, are important because they provide new insights into processes of linguistic development and attrition in general, thus increasing our understanding of the human capacity to maintain and acquire language. Understanding language use and processing in real time and how children acquire language helps us improve language study and pedagogy, which in turn improves communication across the globe. Although our lab does not specialize in language acquisition, we have conducted some studies of acquisition of lesser-studied languages and heritage languages, with the purpose of comparing heritage speakers to adults.

MG-RAST

Metagenomics analysis server

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The MG-RAST server is an open source system for annotation and comparative analysis of metagenomes. Users can upload raw sequence data in fasta format; the sequences will be normalized and processed and summaries automatically generated. The server provides several methods to access the different data types, including phylogenetic and metabolic reconstructions, and the ability to compare the metabolism and annotations of one or more metagenomes and genomes. In addition, the server offers a comprehensive search capability. Access to the data is password protected, and all data generated by the automated pipeline is available for download in a variety of common formats. MG-RAST has become an unofficial repository for metagenomic data, providing a means to make your data public so that it is available for download and viewing of the analysis without registration, as well as a static link that you can use in publications. It also requires that you include experimental metadata about your sample when it is made public to increase the usefulness to the community.

ScienceBase USGS

ScienceBase catalog

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ScienceBase provides access to aggregated information derived from many data and information domains, including feeds from existing data systems, metadata catalogs, and scientists contributing new and original content. ScienceBase architecture is designed to help science teams and data practitioners centralize their data and information resources to create a foundation needed for their work. ScienceBase, both original software and engineered components, is released as an open source project to promote involvement from the larger scientific programming community both inside and outside the USGS.

Nuclear Receptor Signaling Atlas

NURSA Hub

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>>> !!! the repository is offline !!! <<< More information see: https://dknet.org/about/NURSA_Archive All NURSA-biocurated transcriptomic datasets have been preserved for data mining in SPP through an enhanced and expanded version of Transcriptomine named Ominer. To access these datasets, dkNET provides users with the information of 527 transcriptomic datasets that contain data related to nuclear receptors and nuclear receptor coregulators in the NURSA Datasets table view and redirects users to the current SPP dataset page. Once users find the specific dataset of research interest, users can download the dataset by clicking DOI and then clicking the Download Dataset button at the Signaling Pathways Project webpage. See https://www.re3data.org/repository/r3d100013650

Critical Zone Observatories data

CZO data

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The NSF-supported Program serves the international scientific community through research, infrastructure, data, and models. We focus on how components of the Critical Zone interact, shape Earth's surface, and support life. ARCHIVED CONTENT: In December 2020, the CZO program was succeeded by the Critical Zone Collaborative Network (CZ Net) https://criticalzone.org/

Atmosphere to Electrons, Data Archive and Portal

A2e, DAP

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Atmosphere to Electrons (A2e) is a new, multi-year, multi-stakeholder U.S. Department of Energy (DOE) research and development initiative tasked with improving wind plant performance and mitigating risk and uncertainty to achieve substantial reduction in the cost of wind energy production. The A2e strategic vision will enable a new generation of wind plant technology, in which smart wind plants are designed to achieve optimized performance stemming from more complete knowledge of the inflow wind resource and complex flow through the wind plant.

Population Services International Dataverse

PSI Dataverse

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PSI is a global health organization dedicated to improving the health of people in the developing world by focusing on serious challenges like a lack of family planning, HIV and AIDS, barriers to maternal health, and the greatest threats to children under five, including malaria, diarrhea, pneumonia and malnutrition. A hallmark of PSI is a commitment to the principle that health services and products are most effective when they are accompanied by robust communications and distribution efforts that help ensure wide acceptance and proper use. PSI works in partnership with local governments, ministries of health and local organizations to create health solutions that are built to last. We use original data to monitor and evaluate our programs, generate consumer insight, estimate the impact of our solutions, and evaluate the health of the markets we work to strengthen.

kilthub figshare

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Provided by the University Libraries, KiltHub is the comprehensive institutional repository and research collaboration platform for research data and scholarly outputs produced by members of Carnegie Mellon University and their collaborators. KiltHub collects, preserves, and provides stable, long-term global open access to a wide range of research data and scholarly outputs created by faculty, staff, and student members of Carnegie Mellon University in the course of their research and teaching.

Emage

e-Mouse Atlas of Gene Expression

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EMAGE (e-Mouse Atlas of Gene Expression) is an online biological database of gene expression data in the developing mouse (Mus musculus) embryo. The data held in EMAGE is spatially annotated to a framework of 3D mouse embryo models produced by EMAP (e-Mouse Atlas Project). These spatial annotations allow users to query EMAGE by spatial pattern as well as by gene name, anatomy term or Gene Ontology (GO) term. EMAGE is a freely available web-based resource funded by the Medical Research Council (UK) and based at the MRC Human Genetics Unit in the Institute of Genetics and Molecular Medicine, Edinburgh, UK.

Inter-university Consortium for Political and Social Research

ICPSR data archive

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ICPSR maintains a data archive of more than 250,000 files of research in the social and behavioral sciences. It hosts 21 specialized collections of data in education, aging, criminal justice, substance abuse, terrorism, and other fields. ICPSR advances and expands social and behavioral research, acting as a global leader in data stewardship and providing rich data resources and responsive educational opportunities for present and future generations.

RUresearch Data Portal

Rutgers University Research Data Portal

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RUresearch Data Portal is a subset of RUcore (Rutgers University Community Repository), provides a platform for Rutgers researchers to share their research data and supplementary resources with the global scholarly community. This data portal leverages all the capabilities of RUcore with additional tools and services specific to research data. It provides data in different clusters (research-genre) with excellent search facility; such as experimental data, multivariate data, discrete data, continuous data, time series data, etc. However it facilitates individual research portals that include the Video Mosaic Collaborative (VMC), an NSF-funded collection of mathematics education videos for Teaching and Research. Its' mission is to maintain the significant intellectual property of Rutgers University; thereby intended to provide open access and the greatest possible impact for digital data collections in a responsible manner to promote research and learning.

GenBank

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GenBank® is a comprehensive database that contains publicly available nucleotide sequences for almost 260 000 formally described species. These sequences are obtained primarily through submissions from individual laboratories and batch submissions from large-scale sequencing projects, including whole-genome shotgun (WGS) and environmental sampling projects. Most submissions are made using the web-based BankIt or standalone Sequin programs, and GenBank staff assigns accession numbers upon data receipt. Daily data exchange with the European Nucleotide Archive (ENA) and the DNA Data Bank of Japan (DDBJ) ensures worldwide coverage. GenBank is accessible through the NCBI Entrez retrieval system, which integrates data from the major DNA and protein sequence databases along with taxonomy, genome, mapping, protein structure and domain information, and the biomedical journal literature via PubMed. BLAST provides sequence similarity searches of GenBank and other sequence databases. Complete bimonthly releases and daily updates of the GenBank database are available by FTP.

Arch

Research and Data Repository

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Arch is an open access repository for the research and scholarly output of Northwestern University. Log in with your NetID to deposit, describe, and organize your research for public access and long-term preservation. We'll use our expertise to help you curate, share, and preserve your work.

CCHDO

CLIVAR and Carbon Hydrographic Data Office

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The CCHDO provides access to standard, well-described datasets from reference-quality repeat hydrography expeditions. It curates high quality full water column Conductivity-Temperature-Depth (CTD), hydrographic, carbon and tracer data from over 2,500 cruises from ~30 countries. It is the official data center for CTD and water sample profile data from the Global Ocean Ship-Based Hydrographic Investigations Program (GO-SHIP), as well as for WOCE, US Hydro, and other high quality repeat hydrography lines (e.g. SOCCOM, HOT, BATS, WOCE, CARINA.)

PhysioNet

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Modern signal processing and machine learning methods have exciting potential to generate new knowledge that will impact both physiological understanding and clinical care. Access to data - particularly detailed clinical data - is often a bottleneck to progress. The overarching goal of PhysioNet is to accelerate research progress by freely providing rich archives of clinical and physiological data for analysis. The PhysioNet resource has three closely interdependent components: An extensive archive ("PhysioBank"), a large and growing library of software ("PhysioToolkit"), and a collection of popular tutorials and educational materials

Synapse

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Synapse is an open source software platform that clinical and biological data scientists can use to carry out, track, and communicate their research in real time. Synapse enables co-location of scientific content (data, code, results) and narrative descriptions of that work.

Open Science Framework

OSF

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The Open Science Framework (OSF) is part network of research materials, part version control system, and part collaboration software. The purpose of the software is to support the scientist's workflow and help increase the alignment between scientific values and scientific practices. Document and archive studies. Move the organization and management of study materials from the desktop into the cloud. Labs can organize, share, and archive study materials among team members. Web-based project management reduces the likelihood of losing study materials due to computer malfunction, changing personnel, or just forgetting where you put the damn thing. Share and find materials. With a click, make study materials public so that other researchers can find, use and cite them. Find materials by other researchers to avoid reinventing something that already exists. Detail individual contribution. Assign citable, contributor credit to any research material - tools, analysis scripts, methods, measures, data. Increase transparency. Make as much of the scientific workflow public as desired - as it is developed or after publication of reports. Find public projects here. Registration. Registering materials can certify what was done in advance of data analysis, or confirm the exact state of the project at important points of the lifecycle such as manuscript submission or at the onset of data collection. Discover public registrations here. Manage scientific workflow. A structured, flexible system can provide efficiency gain to workflow and clarity to project objectives, as pictured.