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Found 98 result(s)

ExPASy Bioinformatics Resource Portal

SIB Bioinformatics Resource Portal

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Swiss Institute of Bioinformatics (SIB) coordinates research and education in bioinformatics throughout Switzerland and provides bioinformatics services to the national and international research community. ExPASy gives access to numerous repositories and databases of SIB. For example: array map, MetaNetX, SWISS-MODEL and World-2DPAGE, and many others see a list here http://www.expasy.org/resources

PubChem

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Pubchem contains 3 databases. 1. PubChem BioAssay: The PubChem BioAssay Database contains bioactivity screens of chemical substances described in PubChem Substance. It provides searchable descriptions of each bioassay, including descriptions of the conditions and readouts specific to that screening procedure. 2. PubChem Compound: The PubChem Compound Database contains validated chemical depiction information provided to describe substances in PubChem Substance. Structures stored within PubChem Compounds are pre-clustered and cross-referenced by identity and similarity groups. 3. PubChem Substance. The PubChem Substance Database contains descriptions of samples, from a variety of sources, and links to biological screening results that are available in PubChem BioAssay. If the chemical contents of a sample are known, the description includes links to PubChem Compound.

NARSTO

North American Research Strategy for Tropospheric Ozone

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>>>!!!<<< the repository is offline >>>!!!<<< NARSTO is dedicated to improving management of air quality in North America. Additionally, NARSTO is working to improve collaboration between the air-quality and health-sciences research communities, to advance understanding of the scientific issues involved in effecting a multi-pollutant/multi-media approach to air quality management, and to increase understanding of the linkages between air quality and climate change. NARSTO is represented by private and public organizations in Canada, Mexico, and the United States. NARSTO was terminated as of December 31, 2010. While data remain available via the original NARSTO Data Archive, the permanent data archive is maintained by the NASA Langley Research Center Atmospheric Science Data Center

Community Data Portal

CDP

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!!!! <<<< The Community Data Portal (CDP) has been retired after nearly 15 years of service and is no longer available. Data can now be found here: DASH Search: https://data.ucar.edu/ . Please contact us with questions or concerns: datahelp@ucar.edu >>>> !!!! The Community Data Portal (CDP) is a collection of earth science datasets from NCAR, UCAR, UOP, and participating organizations.

Breast Cancer Surveillance Consortium

BCSC

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The Breast Cancer Surveillance Consortium (BCSC) is a research resource for studies designed to assess the delivery and quality of breast cancer screening and related patient outcomes in the United States. The BCSC is a collaborative network of seven mammography registries with linkages to tumor and/or pathology registries. The network is supported by a central Statistical Coordinating Center.

KRISHI - Knowledge based Resources Information Systems Hub for Innovations in Agriculture

ICAR Research Data Repository for Knowledge Management

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KRISHI Portal is an initiative of Indian Council of Agricultural Research (ICAR) to bring its knowledge resources to all stakeholders at one place. The portal is being developed as a centralized data repository system of ICAR consisting of Technology, Data generated through Experiments/ Surveys/ Observational studies, Geo-spatial data, Publications, Learning Resources etc. For implementation of research data management electronically in ICAR Institutes and digitization of agricultural research, KRISHI (Knowledge based Resources Information Systems Hub for Innovations in Agriculture) Portal has been developed as ICAR Research Data Repository for knowledge management. Data Inventory Repository aims at creating Meta Data Inventory through information related to data availability at Institute level. The portal consists of six repositories viz. technology, publication, experimental data, observational data survey data and geo-portal. The portal can be accessed at http://krishi.icar.gov.in. During the period of 2016-17, input data on latitude and longitude of all KVKs under this Zone was submitted to the concerned authority to put them in geo-portal. One brainstorming session was organized at this institute for all scientists on its use and uploading information in portal. As per guidelines of the council, various kinds of publications pertaining to this institute were also uploaded in this portal.

Australian Urban Research Infrastructure Network

AURIN

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AURIN is a collaborative national network of leading researchers and data providers across the academic, government, and private sectors. We provide a one-stop online workbench with access to thousands of multidisciplinary datasets, from over 100 different data sources.

CDC - Climate Data Center

Deutscher Wetterdienst - DWD

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The CDC Data Catalogue describes the Climate Data of the DWD and provides access to data, descriptions and access methods. Climate Data refers to observations, statistical indices and spatial analyses. CDC comprises Climate Data for Germany, but also global Climate Data, which were collected and processed in the framework of international co-operation. The CDC Data Catalogue is under construction and not yet complete. The purposes of the CDC Data Catalogue are: to provide uniform access to climate data centres and climate datasets of the DWD to describe the climate data according to international metadata standards to make the catalogue information available on the Internet to support the search for climate data to facilitate the access to climate data and climate data descriptions

HUGO Gene Nomenclature Committee

HGNC

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The HUGO Gene Nomenclature Committee (HGNC) assigned unique gene symbols and names to over 35,000 human loci, of which around 19,000 are protein coding. This curated online repository of HGNC-approved gene nomenclature and associated resources includes links to genomic, proteomic and phenotypic information, as well as dedicated gene family pages.

ETH Zürich Research Collection

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The Research Collection is ETH Zurich's publication platform. It unites the functions of a university bibliography, an open access repository and a research data repository within one platform. Researchers who are affiliated with ETH Zurich, the Swiss Federal Institute of Technology, may deposit research data from all domains. They can publish data as a standalone publication, publish it as supplementary material for an article, dissertation or another text, share it with colleagues or a research group, or deposit it for archiving purposes. Research-data-specific features include flexible access rights settings, DOI registration and a DOI preview workflow, content previews for zip- and tar-containers, as well as download statistics and altmetrics for published data. All data uploaded to the Research Collection are also transferred to the ETH Data Archive, ETH Zurich’s long-term archive.

NCBI Gene

Gene

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The Gene database provides detailed information for known and predicted genes defined by nucleotide sequence or map position. Gene supplies gene-specific connections in the nexus of map, sequence, expression, structure, function, citation, and homology data. Unique identifiers are assigned to genes with defining sequences, genes with known map positions, and genes inferred from phenotypic information. These gene identifiers are used throughout NCBI's databases and tracked through updates of annotation. Gene includes genomes represented by NCBI Reference Sequences (or RefSeqs) and is integrated for indexing and query and retrieval from NCBI's Entrez and E-Utilities systems.

Center for International Earth Science Information Network

CIESIN

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CIESIN is an interdisciplinary research and data center that provides access to a wide range of global data, associated documentation, and visualization and analysis tools to improve understanding of human interactions in the environment.

Marine Data Portal

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The Marine Data Portal is a product of the “Underway”- Data initiative of the German Marine Research Alliance (Deutsche Allianz Meeresforschung - DAM) and is supported by the marine science centers AWI, GEOMAR and Hereon of the Helmholtz Association. This initiative aims to improve and standardize the systematic data collection and data evaluation for expeditions with German research vessels and marine observation. It supports scientists in their data management duties and fosters (data) science through FAIR and open access to marine research data. AWI, GEOMAR and Hereon develop this marine data hub (Marehub) to build a decentralized data infrastructure for processing, long-term archiving and dissemination of marine observation and model data and data products. The Marine Data Portal provides user-friendly, centralized access to marine research data, reports and publications from a wide range of data repositories and libraries in the context of German marine research and its international collaboration. The Marine Data Portal is developed by scientists for scientists in order to facilitate Findability and Access of marine research data for Reuse. It supports machine-readable and data driven science. Please note that the quality of the data may vary depending on the purpose for which it was originally collected.

Fordatis

Research Data Repository of Fraunhofer-Gesellschaft

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Fordatis is the institutional research data repository of the Fraunhofer-Gesellschaft. Fraunhofer-Gesellschaft based in Germany is Europes largest research and technology organization. Fordatis contains research data created by researcher at Fraunhofer. These are data from the engineering, natural sciences and social sciences.

meereisportal.de

seaiceportal.de

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Satellite observations of sea ice concentration in the Arctic and the Antarctic are the backbone of www.meereisportal.de since its launch in April 2013. Since then, daily maps and data sets are published on the information and data portal. Time series and trends are updated daily, representing the status of the sea ice cover on hemispheres. meereisportal.de/seaiceportal.de was laid out as an open portal and shall serve scientific groups performing research on sea ice as a platform for communicating the results of their research.

Copernicus

The European Earth Observation Pogramme

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Copernicus is a European system for monitoring the Earth. Copernicus consists of a complex set of systems which collect data from multiple sources: earth observation satellites and in situ sensors such as ground stations, airborne and sea-borne sensors. It processes these data and provides users with reliable and up-to-date information through a set of services related to environmental and security issues. The services address six thematic areas: land monitoring, marine monitoring, atmosphere monitoring, climate change, emergency management and security. The main users of Copernicus services are policymakers and public authorities who need the information to develop environmental legislation and policies or to take critical decisions in the event of an emergency, such as a natural disaster or a humanitarian crisis. Based on the Copernicus services and on the data collected through the Sentinels and the contributing missions , many value-added services can be tailored to specific public or commercial needs, resulting in new business opportunities. In fact, several economic studies have already demonstrated a huge potential for job creation, innovation and growth.

NCBI Influenza Virus Resource

NCBI Flu

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This resource allows users to search for and compare influenza virus genomes and gene sequences taken from GenBank. It also provides a virus sequence annotation tool and links to other influenza resources: NIAID project, JCVI Flu, Influenza research database, CDC Flu, Vaccine Selection and WHO Flu. NOTE: The redirects that are planned for completion by May 2024 will NOT impact the Influenza Virus Resource in any way. The Influenza Virus Resource will continue to be available, serving up data to support our Flu-research community.

NCBI Protein Clusters

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The Entrez Protein Clusters database contains annotation information, publications, structures and analysis tools for related protein sequences encoded by complete genomes. The data available in the Protein Clusters Database is generated from prokaryotic genomic studies and is intended to assist researchers studying micro-organism evolution as well as other biological sciences. Available genomes include plants and viruses as well as organelles and microbial genomes.

CSIRO Data Access Portal

CSIRO DAP

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The CSIRO Data Access Portal provides access to data published by CSIRO across a range of disciplines to facilitate sharing and reuse of data held by CSIRO.

Reciprocal Net

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The Reciprocal Net is a distributed database used by research crystallographers to store information about molecular structures; much of the data is available to the general public. The Reciprocal Net project is still under development. Currently, there are 18 participating crystallography laboratories online. The project is funded by the National Science Foundation (NSF) and part of the National Science Digital Library. The contents of this collection will come principally from structures contributed by participating crystallography laboratories, thus providing a means for teachers, students, and the general public to connect better with current chemistry research. The Reciprocal Net's emphasis is on obtaining structures of general interest and usefulness to those several classes of digital library users.

Data Center for Aurora in NIPR

Polar Data Center

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The Data Center for Aurora in NIPR is responsible for data archiving and dissemination of all-sky camera observations, visual observations, other optical observations (such as TV and photometric observations), auroral image and particle observations from satellites, geomagnetic observations, and observations of upper atmosphere phenomena associated with aurora such as ULF, VLF and CNA activities. This Data Catalogue summarizes the collection of data sets, data books, related publications and facilities available in the WDC for Aurora as of December 2003. The WDC for Aurora changed its name as "Data Center for Aurora in NIPR" in 2008 due to the disappearance of the WDC panel in ICSU.

International Space Environment Service

ISES

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The International Space Environment Service (ISES) is a collaborative network of space weather service-providing organizations around the globe. Our mission is to improve, to coordinate, and to deliver operational space weather services. ISES is organized and operated for the benefit of the international space weather user community.

Canadian Biodiversity Information Facility

Système canadien d'information sur la biodiversité

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!!! <<< the repository is offline >>> !!! The CBIF provides primary data on biological species of interest to Canadians. CBIF supports a wide range of social and economic decisions including efforts to conserve our biodiversity in healthy ecosystems, use our biological resources in sustainable ways, and monitor and control pests and diseases. Tools provided by the CBIF include the Integrated Taxonomic Information System (ITIS), Species Access Network, Online Mapping, and the SpeciesBank, including Butterflies of Canada. The CBIF is a member of the Global Biodiversity Information Facility (GBIF).

AceView

AceView genes

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AceView provides a curated, comprehensive and non-redundant sequence representation of all public mRNA sequences (mRNAs from GenBank or RefSeq, and single pass cDNA sequences from dbEST and Trace). These experimental cDNA sequences are first co-aligned on the genome then clustered into a minimal number of alternative transcript variants and grouped into genes. Using exhaustively and with high quality standards the available cDNA sequences evidences the beauty and complexity of mammals’ transcriptome, and the relative simplicity of the nematode and plant transcriptomes. Genes are classified according to their inferred coding potential; many presumably non-coding genes are discovered. Genes are named by Entrez Gene names when available, else by AceView gene names, stable from release to release. Alternative features (promoters, introns and exons, polyadenylation signals) and coding potential, including motifs, domains, and homologies are annotated in depth; tissues where expression has been observed are listed in order of representation; diseases, phenotypes, pathways, functions, localization or interactions are annotated by mining selected sources, in particular PubMed, GAD and Entrez Gene, and also by performing manual annotation, especially in the worm. In this way, both the anatomy and physiology of the experimentally cDNA supported human, mouse and nematode genes are thoroughly annotated.

Hardwood Genomics Project

HWG

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This database serves forest tree scientists by providing online access to hardwood tree genomic and genetic data, including assembled reference genomes, transcriptomes, and genetic mapping information. The web site also provides access to tools for mining and visualization of these data sets, including BLAST for comparing sequences, Jbrowse for browsing genomes, Apollo for community annotation and Expression Analysis to build gene expression heatmaps.