Filter
Subjects
Content Types
Countries
AID systems
API
Certificates
Data access
Data access restrictions
Database access
Database access restrictions
Database licenses
Data licenses
Data upload
Data upload restrictions
Enhanced publication
Institution responsibility type
Institution type
Keywords
Metadata standards
PID systems
Provider types
Quality management
Repository languages
Software
Syndications
Repository types
Versioning
-
*at the end of a keyword allows wildcard searches -
"quotes can be used for searching phrases -
+represents an AND search (default) -
|represents an OR search -
-represents a NOT operation -
(and)implies priority -
~Nafter a word specifies the desired edit distance (fuzziness) -
~Nafter a phrase specifies the desired slop amount
Found 133 result(s)
Subject(s)
Content type(s)
Country
Swiss Institute of Bioinformatics (SIB) coordinates research and education in bioinformatics throughout Switzerland and provides bioinformatics services to the national and international research community. ExPASy gives access to numerous repositories and databases of SIB. For example: array map, MetaNetX, SWISS-MODEL and World-2DPAGE, and many others see a list here http://www.expasy.org/resources
Subject(s)
Country
The RAMEDIS system is a platform independent, web-based information system for rare metabolic diseases based on filed case reports. It was developed in close cooperation with clinical partners to allow them to collect information on rare metabolic diseases with extensive details, e.g. about occurring symptoms, laboratory findings, therapy and molecular data.
Content type(s)
Country
The USU-IR digital repository system captures, stores, indexes, preserves, and distributes digital research material.
Subject(s)
Content type(s)
Country
The BioStudies database holds descriptions of biological studies, links to data from these studies in other databases at EMBL-EBI or outside, as well as data that do not fit in the structured archives at EMBL-EBI. The database accepts submissions via an online tool, or in a simple tab-delimited format. It also enables authors to submit supplementary information and link to it from the publication.
Subject(s)
Content type(s)
Country
Podlasie digital repository of natural science data
Subject(s)
Content type(s)
Country
The Health Atlas is an alliance of medical ontologists, medical systems biologists and clinical trials groups to design and implement a multi-functional and quality-assured atlas. It provides models, data and metadata on specific use cases from medical research projects from the partner institutions.
Subject(s)
Content type(s)
Country
Bitbucket is a web-based version control repository hosting service owned by Atlassian, for source code and development projects that use either Mercurial or Git revision control systems.
Subject(s)
Content type(s)
Country
idUS is the digital archive that gives access to full text of the scientific production of the University of Seville and their datasets. Its objective is to gather, preserve and disseminate the documents and data resulting from the scientific activity of the University, making the documents visible, accessible, recoverable, usable and preservable for any user.
Content type(s)
Country
The Digital Collections include digitized manuscripts, prints, music, maps, photographs, newspapers and magazines from the rich holdings of the Bayerische Staatsbibliothek.
Almost the entire content (>98%) is available for download for research purposes or via IIIF APIs, including all available OCR data.
Content type(s)
Country
The Materials Project produces one of the world's foremost databases of computed information about inorganic, crystalline materials, along with providing powerful web-based apps to help analyze this information to help the design of novel materials. Access is provided free-of-charge with an API available and under a permissive license.
Subject(s)
Content type(s)
Country
A domain-specific repository for Social Sciences and Humanities data, primarily aimed at the Netherlands, but not exclusively.
Subject(s)
Content type(s)
Country
Stanford Network Analysis Platform (SNAP) is a general purpose network analysis and graph mining library. It is written in C++ and easily scales to massive networks with hundreds of millions of nodes, and billions of edges. It efficiently manipulates large graphs, calculates structural properties, generates regular and random graphs, and supports attributes on nodes and edges. SNAP is also available through the NodeXL which is a graphical front-end that integrates network analysis into Microsoft Office and Excel. The SNAP library is being actively developed since 2004 and is organically growing as a result of our research pursuits in analysis of large social and information networks. Largest network we analyzed so far using the library was the Microsoft Instant Messenger network from 2006 with 240 million nodes and 1.3 billion edges.
The datasets available on the website were mostly collected (scraped) for the purposes of our research.
The website was launched in July 2009.
Subject(s)
Content type(s)
Country
Climate4impact: a dedicated interface to ESGF for the climate impact community
The portal Climate4impact, part of the ENES Data Infrastructure, provides access to data and quick looks of global and regional climate models and downscaled higher resolution climate data. The portal provides data transformation tooling and mapping & plotting capabilities, guidance, documentation, FAQ and examples.
The Climate4Impact portal will be further developed during the IS-ENES3 project (2019-2023)and moved to a different environment. Meanwhile the portal at https://climate4impact.eu will remain available, but no new information or processing options will be included. When the new portal will become available this will be announced on https://is.enes.org/.
Subject(s)
Content type(s)
Country
nanoHUB.org is the premier place for computational nanotechnology research, education, and collaboration. Our site hosts a rapidly growing collection of Simulation Programs for nanoscale phenomena that run in the cloud and are accessible through a web browser. In addition to simulation devices, nanoHUB provides Online Presentations, Courses, Learning Modules, Podcasts, Animations, Teaching Materials, and more. These resources help users learn about our simulation programs and about nanotechnology in general. Our site offers researchers a venue to explore, collaborate, and publish content, as well. Much of these collaborative efforts occur via Workspaces and User groups.
Content type(s)
Country
The Purdue University Research Repository (PURR) provides a virtual research environment and data publication and archiving platform for its campuses. Also supports the publication and online execution of software tools with DataCite DOIs.
Subject(s)
Content type(s)
Country
Dataverse to host followup observations of galaxy clusters identified in South Pole Telescope SZ Surveys. This includes: 1) GMOS spectroscopy of low to moderate redshift galaxy clusters taken as a part of NOAO Large Survey Program 11A-0034 (PI: Christopher Stubbs).
Subject(s)
Country
Gramene is a platform for comparative genomic analysis of agriculturally important grasses, including maize, rice, sorghum, wheat and barley. Relationships between cereals are queried and displayed using controlled vocabularies (Gene, Plant, Trait, Environment, and Gramene Taxonomy) and web-based displays, including the Genes and Quantitative Trait Loci (QTL) modules.
Subject(s)
Content type(s)
Country
IATI is a voluntary, multi-stakeholder initiative that seeks to improve the transparency of aid, development, and humanitarian resources in order to increase their effectiveness in tackling poverty. IATI brings together donor and recipient countries, civil society organisations, and other experts in aid information who are committed to working together to increase the transparency and openness of aid. - See more at: https://iatistandard.org/en/about/#sthash.BYPZ6NPt.dpuf
Subject(s)
Content type(s)
Country
The ZINC Database contains commercially available compounds for structure based virtual screening. It currently has compounds that can simply be purchased. It is provided in ready-to-dock, 3D formats with molecules represented in biologically relevant forms. It is available in subsets for general screening as well as target-, chemotype- and vendor-focused subsets. ZINC is free for everyone to use and download at the website zinc.docking.org.
Subject(s)
Country
>>>This repository is no longer available<<< Go-Geo is an online resource discovery tool which allows for the identification and retrieval of records describing the content, quality, condition and other characteristics of geospatial data that exist with UK tertiary education and beyond. The portal supports geospatial searching by interactive map, grid co-ordinates and place name, as well as the more traditional topic or keyword forms of searching. The portal is a key component of the UK academic Spatial Data Infrastructure.
Subject(s)
Content type(s)
Country
AceView provides a curated, comprehensive and non-redundant sequence representation of all public mRNA sequences (mRNAs from GenBank or RefSeq, and single pass cDNA sequences from dbEST and Trace). These experimental cDNA sequences are first co-aligned on the genome then clustered into a minimal number of alternative transcript variants and grouped into genes. Using exhaustively and with high quality standards the available cDNA sequences evidences the beauty and complexity of mammals’ transcriptome, and the relative simplicity of the nematode and plant transcriptomes. Genes are classified according to their inferred coding potential; many presumably non-coding genes are discovered. Genes are named by Entrez Gene names when available, else by AceView gene names, stable from release to release.
Alternative features (promoters, introns and exons, polyadenylation signals) and coding potential, including motifs, domains, and homologies are annotated in depth; tissues where expression has been observed are listed in order of representation; diseases, phenotypes, pathways, functions, localization or interactions are annotated by mining selected sources, in particular PubMed, GAD and Entrez Gene, and also by performing manual annotation, especially in the worm.
In this way, both the anatomy and physiology of the experimentally cDNA supported human, mouse and nematode genes are thoroughly annotated.
Subject(s)
Content type(s)
Country
>>>!!!<<<2019-02-19: The repository is no longer available>>>!!!<<<
>>>!!!<<<Data is archived at ChemSpider https://www.chemspider.com/Search.aspx?dsn=UsefulChem and https://www.chemspider.com/Search.aspx?dsn=Usefulchem Group Bradley Lab >>>!!!<<<
see more information at the Standards tab at 'Remarks'
Subject(s)
Content type(s)
Country
Catena, the Digital Archive of Historic Gardens and Landscapes, is a collection of historic and contemporary images, including plans, engravings, and photographs, intended to support research and teaching in the fields of garden history and landscape studies. Created through the collaborative efforts of landscape historians and institutions, the initial offering of images is focused on the Villas as a Landscape Type.
Subject(s)
Content type(s)
Country
<<<!!!<<< This repository is no longer available. >>>!!!>>>
Migration of the data, tools, and services from IRD and ViPR to BV-BRC is complete! We are now in the sunsetting phase of the transition. Starting on October 31, 2022, launching the IRD or ViPR home pages will redirect you to the new BV-BRC home page. The current plan is to completely shut down IRD and ViPR by the end of this calendar year. Although it will still be possible to use those sites until shutdown, we strongly encourage you to start using BV-BRC now.
Subject(s)
Content type(s)
Country
MycoCosm, the DOE JGI’s web-based fungal genomics resource, which integrates fungal genomics data and analytical tools for fungal biologists. It provides navigation through sequenced genomes, genome analysis in context of comparative genomics and genome-centric view. MycoCosm promotes user community participation in data submission, annotation and analysis.
- Current projects
- EOSC FAIR-IMPACT
- re3data COREF
-
To the extent possible under law,
re3data.org
has waived all copyright and related or neighboring rights to
the database entries of re3data.org.
-
Except where otherwise noted, content on this site is licensed under a
Creative Commons Attribution 4.0 International License
.
- Cite this service: re3data.org - Registry of Research Data Repositories. https://doi.org/10.17616/R3D last accessed: 2024-04-25
