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Found 2020 result(s)
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The aim of this repository is for it to be a location from which a wide variety of well analysed IFC-based data files can be sourced. It is planned that over time the number of data files will expand to provide significant coverage of the major aspects that would need to be tested for interoperability.
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APID Interactomes is a database that provides a comprehensive collection of protein interactomes for more than 400 organisms based in the integration of known experimentally validated protein-protein physical interactions (PPIs). Construction of the interactomes is done with a methodological approach to report quality levels and coverage over the proteomes for each organism included. In this way, APID provides interactomes from specific organisms that in 25 cases have more than 500 proteins. As a whole APID includes a comprehensive compendium of 90,379 distinct proteins and 678,441 singular interactions. The analytical and integrative effort done in APID unifies PPIs from primary databases of molecular interactions (BIND, BioGRID, DIP, HPRD, IntAct, MINT) and also from experimentally resolved 3D structures (PDB) where more than two distinct proteins have been identified. In this way, 8,388 structures have been analyzed to find specific protein-protein interactions reported with details of their molecular interfaces. APID also includes a new data visualization web-tool that allows the construction of sub-interactomes using query lists of proteins of interest and the visual exploration of the corresponding networks, including an interactive selection of the properties of the interactions (i.e. the reliability of the "edges" in the network) and an interactive mapping of the functional environment of the proteins (i.e. the functional annotations of the "nodes" in the network).
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The Service Centre of the Federal Government for Geo-Information and Geodesy (Dienstleistungszentrum des Bundes für Geoinformation und Geodäsie - DLZ) provides geodetic and geo-topographic reference data of the Federal Government centrally to federal institutions, public administrations, economy, science and citizens. The establishment of the Service Centre is based on the Federal Geographic Reference Data Act (Bundesgeoreferenzdatengesetz − BGeoRG), which came into effect on 1 November 2012. This act regulates use, quality and technology of the geodetic and geo-topographic reference systems, networks and data.
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The Comparative RNA Web (CRW) Site disseminates information about RNA structure and evolution that has been determined using comparative sequence analysis. We present both raw (sequences, structure models, metadata) and processed (analyses, evolution, accuracy) data, organized into four main sections.
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The CosmoSim database provides results from cosmological simulations performed within different projects: the MultiDark and Bolshoi project, and the CLUES project.
The CosmoSim webpage provides access to several cosmological simulations, with a separate database for each simulation. Simulations overview: https://www.cosmosim.org/cms/simulations/simulations-overview/ .
CosmoSim is a contribution to the German Astrophysical Virtual Observatory.
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Making government data available, accessible, and re-usable.
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Explore the City of Toronto's open data catalogue, including datasets from a wide range of City divisions.
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The Maine Dataverse Network is a cloud-based data repository intended to act as a long-term archive and to facilitate data sharing among the research community in accordance with NSF, NIH, NASA and other granting authority data management plan requirements. The Maine Dataverse Network offers a convenient and secure method of sharing and archiving data and is made available to the Maine research community at no cost.
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CottonGen is a new cotton community genomics, genetics and breeding database being developed to enable basic, translational and applied research in cotton. It is being built using the open-source Tripal database infrastructure. CottonGen consolidates and expands the data from CottonDB and the Cotton Marker Database, providing enhanced tools for easy querying, visualizing and downloading research data.
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The USDA Agricultural Marketing Service (AMS) Cotton Program maintains a National Database (NDB) in Memphis, Tennessee for owner access to cotton classification data.
The NDB is computerized telecommunications system which allows owners or authorized agents of owners to retrieve classing data from the current crop and/or the previous four crops.
The NDB stores classing information from all 10 regional classing offices.
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ALSoD is a freely available database that has been transformed from a single gene storage facility recording mutations in the SOD1 gene to a multigene ALS bioinformatics repository and analytical instrument combining genotype, phenotype, and geographical information with associated analysis tools. These include a comparison tool to evaluate genes side by side or jointly with user configurable features, a pathogenicity prediction tool using a combination of computational approaches to distinguish variants with nonfunctional characteristics from disease-associated mutations with more dangerous consequences, and a credibility tool to enable ALS researchers to objectively assess the evidence for gene causation in ALS. Furthermore, integration of external tools, systems for feedback, annotation by users, and two-way links to collaborators hosting complementary databases further enhance the functionality of ALSoD.
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The eyeGENE® Research Resource is open for approved research studies. Application details here Researchers and clinicians are actively developing gene-based therapies to treat ophthalmic genetic diseases that were once considered untreatable.
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This is CSDB version 1 merged from Bacterial (BCSDB) and Plant&Fungal (PFCSDB) databases. This database aims at provision of structural, bibliographic, taxonomic, NMR spectroscopic and other information on glycan and glycoconjugate structures of prokaryotic, plant and fungal origin. It has been merged from the Bacterial and Plant&Fungal Carbohydrate Structure Databases (BCSDB+PFCSDB). The key points of this service are:
High coverage. The coverage for bacteria (up to 2016) and archaea (up to 2016) is above 80%. Similar coverage for plants and fungi is expected in the future. The database is close to complete up to 1998 for plants, and up to 2006 for fungi.
Data quality. High data quality is achieved by manual curation using original publications which is assisted by multiple automatic procedures for error control. Errors present in publications are reported and corrected, when possible. Data from other databases are verified on import.
Detailed annotations. Structural data are supplied with extended bibliography, assigned NMR spectra, taxon identification including strains and serogroups, and other information if available in the original publication.
Services. CSDB serves as a platform for a number of computational services tuned for glycobiology, such as NMR simulation, automated structure elucidation, taxon clustering, 3D molecular modeling, statistical processing of data etc.
Integration. CSDB is cross-linked to other glycoinformatics projects and NCBI databases. The data are exportable in various formats, including most widespread encoding schemes and records using GlycoRDF ontology.
Free web access. Users can access the database for free via its web interface (see Help).
The main source of data is retrospective literature analysis. About 20% of data were imported from CCSD (Carbbank, University of Georgia, Athens; structures published before 1996) with subsequent manual curation and approval. The current coverage is displayed in red on the top of the left menu. The time lag between the publication of new data and their deposition into CSDB is ca. 1 year.
In the scope of bacterial carbohydrates, CSDB covers nearly all structures of this origin published up to 2016. Prokaryotic, plant and fungal means that a glycan was found in the organism(s) belonging to these taxonomic domains or was obtained by modification of those found in them. Carbohydrate means a structure composed of any residues linked by glycosidic, ester, amidic, ketal, phospho- or sulpho-diester bonds in which at least one residue is a sugar or its derivative.
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GeoWeb is the MIT Libraries instance of GeoBlacklight and primarily contains data purchased for use by MIT affiliates.
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Through our decades of hydrological and ecological practices and the activities on the waterways of the German Federal a valuable inventory of hydrological information has emerged in the stuck our experience and knowledge base. Almost all environmental information have a direct or indirect spatial reference. This inventory of spatial data continues to grow. He is both the basis and results of our scientific work. With GGInA, the hydrological Geographical Information and Analysis System of BfG, you can research yourself in this inventory. Much of the information and data is accessed directly on the Metadata Catalog Search and specialist applications. The Geoportal also opens up databases of our partners in the transport and environment. At the same selected data can also be integrated into other environmental portals.
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The World Religion Database (WRD) contains detailed statistics on religious affiliation for every country of the world. It provides source material, including censuses and surveys, as well as best estimates for every religion to offer a definitive picture of international religious demography. It offers best estimates at multiple dates for each of the world’s religions for the period 1900 to 2050.
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The MHKDR is the repository for all data collected using funds from the Water Power Technologies Office (WPTO) of the U.S. Department of Energy (DOE). It was established to receive, manage, and make available all water power relevant data generated from projects funded by the DOE Water Power Technologies Office. This includes data from WPTO-funded projects associated with any portion of the water power project life-cycle (exploration, development, operation), as well as data produced by WPTO-funded research.
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Constellation is a digital object identifier (DOI) based science network for supercomputing data. Constellation makes it possible for OLCF researchers to obtain DOIs for large data collections by tying them together with the associated resources and processes that went into the production of the data (e.g., jobs, collaborators, projects), using a scalable database. It also allows the annotation of the scientific conduct with rich metadata, and enables the cataloging and publishing of the artifacts for open access, aiding in scalable data discovery. OLCF users can use the DOI service to publish datasets even before the publication of the paper, and retain key data even after project expiration. From a center standpoint, DOIs enable the stewardship of data, and better management of the scratch and archival storage.
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The International Soil Carbon Network (ISCN) is a science-based network that facilitates data sharing, assembles databases, identifies gaps in data coverage, and enables spatially explicit assessments of soil carbon in context of landscape, climate, land use, and biotic variables.
The ISCN Database is an evolving data resource. Because it is too large to present in one file, it is available as a set of documents, reports, and tables; because it changes over time, it is important to note the version date stamped in the upper-left corner of any dataset that you access.
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Additional to the the e-publishing offer for articles, books and journals, Propylaeum provides classical scholars with the opportunity to archive the respective research data permanently. These can be linked directly to online publications hosted on the Heidelberg publishing platforms. All research data – e.g. images, videos, audio files, tables, graphics etc. – receive a DOI (Digital Object Identifiyer). Thus, they can be cited, viewed and permanently linked to as distinct academic output.
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Iowa State University’s DataShare is an open access repository for sharing and publishing research data created by Iowa State University scholars and researchers.
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Being both, a demand as well as a chance of the present age of information technology for cultural preservation and continuation, public databases possess an immense importance for providing a comprehensive access to cultural material as far as their contents and also their clientele of users are concerned. Therefore, an exemplary completely preserved stock of primary sources as the one of the Weimar theatre is no less than an invaluable piece of luck, possibly just due to the manageable local conditions of this small (former courtly) town in the middle of German language area. In this English version, first this rare cultural-historical phenomenon and its sources are described. Furthermore, the data- and metadata-contents within the Weimar theatre- and music-ephemera database are presented. Finally, the principal opportunities of searching this (meta-)data pool are explained, where presumed to be necessary supported by screenshot images from the internet platform.
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- Zoology
- Natural Sciences
- Medicine
- Medicine
- Geosciences (including Geography)
- Animal Genetics, Cell and Developmental Biology
- Animal Ecology, Biodiversity and Ecosystem Research
- Water Research
- Nutritional Sciences
- Biology
- Plant Sciences
- Agriculture, Forestry, Horticulture and Veterinary Medicine
- Plant Ecology and Ecosystem Analysis
- Soil Sciences
- Life Sciences
- Agriculture, Forestry, Horticulture and Veterinary Medicine
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Ag Data Commons provides access to a wide variety of open data relevant to agricultural research. We are a centralized repository for data already on the web, as well as for new data being published for the first time. While compliance with the U.S. Federal public access and open data directives is important, we aim to surpass them. Our goal is to foster innovative data re-use, integration, and visualization to support bigger, better science and policy.
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Paris Astronomical Data Centre aims at providing VO access to its data collections, at participating to international standards developments, at implementing VO compliant simulation codes, data visualization and analysis software.
This centre hosts high level permanent activities for tools and data distribution under the format of reference services. These sustainable services are recognized at the national level as CNRS labeled services.
The various activities are organised as portals whose functions are to provide visibility and information on the projects and to encourage collaboration.
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- Condensed Matter Physics
- Physical and Theoretical Chemistry
- Engineering Sciences
- Materials Science and Engineering
- Natural Sciences
- Biology
- Basic Biological and Medical Research
- Optics, Quantum Optics and Physics of Atoms, Molecules and Plasmas
- Experimental Condensed Matter Physics
- Physical Chemistry of Molecules, Interfaces and Liquids - Spectroscopy, Kinetics
- Chemical Solid State and Surface Research
- Materials Science
- Physics
- Chemistry
- Structural Biology
- Life Sciences
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European XFEL Data Portal is provided by myMdC, allowing users to access the metadata of scientific data taken at the European XFEL facility. Datasets are linked to experiment proposals, annotated by data collection types, samples and are assigned DOIs to be referenced in publications.
myMdC helps data management activities and allows users to find open and own proposals data based on the metadata.
- Current projects
- EOSC FAIR-IMPACT
- re3data COREF
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To the extent possible under law,
re3data.org
has waived all copyright and related or neighboring rights to
the database entries of re3data.org.
-
Except where otherwise noted, content on this site is licensed under a
Creative Commons Attribution 4.0 International License
.
- Cite this service: re3data.org - Registry of Research Data Repositories. https://doi.org/10.17616/R3D last accessed: 2024-04-27
