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Found 6 result(s)

FAIRDOMHub

The SEEK datafiles

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The FAIRDOMHub is built upon the SEEK software suite, which is an open source web platform for sharing scientific research assets, processes and outcomes. FAIRDOM (Web Site) will establish a support and service network for European Systems Biology. It will serve projects in standardizing, managing and disseminating data and models in a FAIR manner: Findable, Accessible, Interoperable and Reusable. FAIRDOM is an initiative to develop a community, and establish an internationally sustained Data and Model Management service to the European Systems Biology community. FAIRDOM is a joint action of ERA-Net EraSysAPP and European Research Infrastructure ISBE.

Complex Portal

CP

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The Complex Portal is a manually curated, encyclopaedic resource of macromolecular complexes from a number of key model organisms, entered into the IntAct molecular interaction database (https://www.ebi.ac.uk/intact/). Data includes protein-only complexes as well as protein-small molecule and protein-nucleic acid complexes. All complexes are derived from physical molecular interaction evidences extracted from the literature and cross-referenced in the entry, or by curator inference from information on homologs in closely related species or by inference from scientific background. All complexes are tagged with Evidence and Conclusion Ontology codes to indicate the type of evidence available for each entry.

Marine Information Management System (MIMS)

MIMS

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The South African Marine Information Management System (MIMS) is an Open Archival Information System (OAIS) repository that plays a multifaceted role in archiving, publishing, and preserving marine-related datasets. As an IODE-accredited Associate Data Unit (ADU), MIMS serves as a national node for the IODE of the IOC of UNESCO. It archives and publishes collections and subsets of marine-related datasets for the National Department of Forestry, Fisheries, and the Environment (DFFE) and its regional partners. As an IOC member organization, DFFE is committed to supporting the long-term preservation and archival of marine and coastal data for South Africa and its regional partners, promoting open access to data, and encouraging scientific collaboration. Tasked with the long-term preservation of South Africa's marine and coastal data, MIMS functions as an institutional data repository. It provides primary access to all data collected by the DFFE Oceans and Coastal Research Directorate and acts as a trusted broker of scientific marine data for a wide range of South African institutions. MIMS hosts the IODE AFROBIS Node, an OBIS Node that coordinates and collates data management activities within the sub-Saharan African region. As part of the OBIS Steering Group, MIMS represents sub-Saharan Africa on issues around biological (biodiversity) data standards. It also facilitates data and metadata publishing for the region through the GBIF and OBIS networks. Operating on the Findable, Accessible, Interoperable, and Reusable (FAIR) data principles, MIMS aligns its practices to maximize ocean data exchange and use while respecting the conditions stipulated by the Data Provider. By integrating various functions and commitments, MIMS stands as a vital component in the marine and coastal data landscape, fostering collaboration, standardization, and accessibility in alignment with international standards and regional needs.

SITES Data Portal

Swedish Infrastructure for Ecosystem Science

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The Swedish Infrastructure for Ecosystem Science (SITES) is a national infrastructure for terrestrial and limnological field research. SITES aims to promote high-quality research through long-term field measurements and field experiments, and by making data available. Quality-controlled monitoring data from SITES is freely available on the SITES Data Portal from all participating stations and thematic programs. New datasets are continuously being uploaded.

Human Metabolome Database

HMDB

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The Human Metabolome Database (HMDB) is a freely available electronic database containing detailed information about small molecule metabolites found in the human body. It is intended to be used for applications in metabolomics, clinical chemistry, biomarker discovery and general education.

WikiPathways

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WikiPathways was established to facilitate the contribution and maintenance of pathway information by the biology community. WikiPathways is an open, collaborative platform dedicated to the curation of biological pathways. WikiPathways thus presents a new model for pathway databases that enhances and complements ongoing efforts, such as KEGG, Reactome and Pathway Commons. Building on the same MediaWiki software that powers Wikipedia, we added a custom graphical pathway editing tool and integrated databases covering major gene, protein, and small-molecule systems. The familiar web-based format of WikiPathways greatly reduces the barrier to participate in pathway curation. More importantly, the open, public approach of WikiPathways allows for broader participation by the entire community, ranging from students to senior experts in each field. This approach also shifts the bulk of peer review, editorial curation, and maintenance to the community.