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Found 83 result(s)
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GitHub is the best place to share code with friends, co-workers, classmates, and complete strangers. Over three million people use GitHub to build amazing things together. With the collaborative features of GitHub.com, our desktop and mobile apps, and GitHub Enterprise, it has never been easier for individuals and teams to write better code, faster. Originally founded by Tom Preston-Werner, Chris Wanstrath, and PJ Hyett to simplify sharing code, GitHub has grown into the largest code host in the world.
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A database of optical constants of materials
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Reference anatomies of the brain and corresponding atlases play a central role in experimental neuroimaging workflows and are the foundation for reporting standardized results. The choice of such references —i.e., templates— and atlases is one relevant source of methodological variability across studies, which has recently been brought to attention as an important challenge to reproducibility in neuroscience. TemplateFlow is a publicly available framework for human and nonhuman brain models. The framework combines an open database with software for access, management, and vetting, allowing scientists to distribute their resources under FAIR —findable, accessible, interoperable, reusable— principles. TemplateFlow supports a multifaceted insight into brains across species, and enables multiverse analyses testing whether results generalize across standard references, scales, and in the long term, species, thereby contributing to increasing the reliability of neuroimaging results.
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The tree of life links all biodiversity through a shared evolutionary history. This project will produce the first online, comprehensive first-draft tree of all 1.8 million named species, accessible to both the public and scientific communities. Assembly of the tree will incorporate previously-published results, with strong collaborations between computational and empirical biologists to develop, test and improve methods of data synthesis. This initial tree of life will not be static; instead, we will develop tools for scientists to update and revise the tree as new data come in. Early release of the tree and tools will motivate data sharing and facilitate ongoing synthesis of knowledge.
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Ecosounds is a repository of environmental audio recordings. This website facilitates the management, access, visualization, and analysis of environmental acoustic data. It uses the Acoustic Workbench software which is open source and available from GitHub.
The website is run by the QUT Ecoacoustics Research Group to support bioacoustics and ecoacoustics research.
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The Open Exoplanet Catalogue is a catalogue of all discovered extra-solar planets. It is a new kind of astronomical database. It is decentralized and completely open. We welcome contributions and corrections from both professional astronomers and the general public.
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BioInvestigation Index database enables storing and querying functionalities of experimental biological and biomedical metadata of Leibniz Institute of Plant Biochemistry
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A secure platform for developing and sharing reproducible methods. A research protocol is a document that describes the background, rationale, objectives, design, methodology, statistical considerations, and organization of a clinical research project.
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Ag-Analytics is an online open source database of various economic and environmental data. It automates the collection, formatting, and processing of several different commonly used datasets, such as the National Agricultural Statistics Service (NASS), the Agricultural Marketing Service (AMS), Risk Management agency (RMA), the PRISM weather database, and the U.S. Commodity Futures Trading Commission (CFTC). All the data have been cleaned and well-documented to save users the inconvenience of scraping and cleaning the data themselves.
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Scicat allows users to access the metadata of raw and derived data which is taken at experiment facilities. Scientific datasets are linked to proposals and samples. Scientific datasets are can be linked to publications (DOI, PID). SciCat helps keeping track of data provenance (i.e. the steps leading to the final results). Scicat allows users to find data based on the metadata (both your own data and other peoples’ public data). In the long term, SciCat will help to automate scientific analysis workflows.
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The vehicle routing problem repository (VRP-REP) is an open data platform for sharing instances and solutions for vehicle routing problems.
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OpenWorm aims to build the first comprehensive computational model of the Caenorhabditis elegans (C. elegans), a microscopic roundworm. With only a thousand cells, it solves basic problems such as feeding, mate-finding and predator avoidance. Despite being extremely well studied in biology, this organism still eludes a deep, principled understanding of its biology.
We are using a bottom-up approach, aimed at observing the worm behaviour emerge from a simulation of data derived from scientific experiments carried out over the past decade. To do so we are incorporating the data available in the scientific community into software models. We are engineering Geppetto and Sibernetic, open-source simulation platforms, to be able to run these different models in concert. We are also forging new collaborations with universities and research institutes to collect data that fill in the gaps
All the code we produce in the OpenWorm project is Open Source and available on GitHub.
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The MDR harvests metadata on data objects from a variety of sources within clinical research (e.g. trial registries, data repositories) and brings that together in a single searchable portal. The metadata is concerned with discoverability, access and provenance of the data objects (which because the data may be sensitive will often be available under a controlled access regime). At the moment (01/2021) the MDR obtains study data from: Clinical Trials.gov (CTG), The European Clinical Trials Registry (EUCTR), ISRCTN, The WHO ICTRP
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The Complex Portal is a manually curated, encyclopaedic resource of macromolecular complexes from a number of key model organisms, entered into the IntAct molecular interaction database (https://www.ebi.ac.uk/intact/). Data includes protein-only complexes as well as protein-small molecule and protein-nucleic acid complexes. All complexes are derived from physical molecular interaction evidences extracted from the literature and cross-referenced in the entry, or by curator inference from information on homologs in closely related species or by inference from scientific background. All complexes are tagged with Evidence and Conclusion Ontology codes to indicate the type of evidence available for each entry.
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An open database of parent reports on young children's vocabulary development, alongside a variety of visualization tools.
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Pathway Commons is a convenient point of access to biological pathway information collected from public pathway databases. Information is sourced from public pathway databases and is readily searched, visualized, and downloaded. The data is freely available under the license terms of each contributing database.
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Sinmin contains texts of different genres and styles of the modern and old Sinhala language. The main sources of electronic copies of texts for the corpus are online Sinhala newspapers, online Sinhala news sites, Sinhala school textbooks available in online, online Sinhala magazines, Sinhala Wikipedia, Sinhala fictions available in online, Mahawansa, Sinhala Blogs, Sinhala subtitles and Sri lankan gazette.
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Data Download section provides easy access to the ABMI’s data and innovative data products ranging from raw field data, to species habitat associations, to remote sensing and geospatial products, to animal camera trap data, and more.
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Various data and information available from space-related missions and activities.
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The goal of the Signaling Pathways Project knowledgebase is to allow bench researchers to routinely ask sophisticated questions of the universe of multi-omics data points generated by the cellular signaling community.
SPP is dedicated to helping researchers to make sense of the often overwhelming volume of multi-omics information in the field of cellular signaling.
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nmrXiv is an open, FAIR and consensus-driven NMR spectroscopy data repository and analysis platform. We archive raw and processed NMR data, providing support for browsing, search, analysis, and dissemination of NMR data worldwide.
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A database for plant breeders and researchers to combine, visualize, and interrogate the wealth of phenotype and genotype data generated by the Triticeae Coordinated Agricultural Project (TCAP).
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<<<!!!<<< The NCI CBIIT instance of the NBIA application was retired in March 2022. All data in the application has been transferred to The Cancer Image Archive https://www.re3data.org/repository/r3d100011559 and is available via the Access the Data > Search Radiology Portal menu item. The NBIA software is now maintained on GitHub, and can be built and deployed with the latest improvements and fixes that have been completed for TCIA. >>>!!!>>>
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bio.tools is a software registry for bioinformatics and the life sciences.
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Provides quick, uncluttered access to information about Heliophysics research data that have been described with SPASE resource descriptions.
- Current projects
- EOSC FAIR-IMPACT
- re3data COREF
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To the extent possible under law,
re3data.org
has waived all copyright and related or neighboring rights to
the database entries of re3data.org.
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Except where otherwise noted, content on this site is licensed under a
Creative Commons Attribution 4.0 International License
.
- Cite this service: re3data.org - Registry of Research Data Repositories. https://doi.org/10.17616/R3D last accessed: 2024-04-25
