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Found 36 result(s)

MindBigData

The "MNIST" of Brain Digits

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The version 1.0 of the open database contains 1,151,268 brain signals of 2 seconds each, captured with the stimulus of seeing a digit (from 0 to 9) and thinking about it, over the course of almost 2 years between 2014 & 2015, from a single Test Subject David Vivancos. All the signals have been captured using commercial EEGs (not medical grade), NeuroSky MindWave, Emotiv EPOC, Interaxon Muse & Emotiv Insight, covering a total of 19 Brain (10/20) locations. In 2014 started capturing brain signals and released the first versions of the "MNIST" of brain digits, and in 2018 released another open dataset with a subset of the "IMAGENET" of The Brain. Version 0.05 (last update 09/28/2021) of the open database contains 24,000 brain signals of 2 seconds each, captured with the stimulus of seeing a real MNIST digit (from 0 to 9) 6,000 so far and thinking about it, + the same amout of signals with another 2 seconds of seeing a black screen, shown in between the digits, from a single Test Subject David Vivancos in a controlled still experiment to reduce noise from EMG & avoiding blinks.

Brain Biodiversity Bank

Michigan State University Brain Biodiversity Bank

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The Brain Biodiversity Bank refers to the repository of images of and information about brain specimens contained in the collections associated with the National Museum of Health and Medicine at the Armed Forces Institute of Pathology in Washington, DC. These collections include, besides the Michigan State University Collection, the Welker Collection from the University of Wisconsin, the Yakovlev-Haleem Collection from Harvard University, the Meyer Collection from the Johns Hopkins University, and the Huber-Crosby and Crosby-Lauer Collections from the University of Michigan and the C.U. Ariëns Kappers brain collection from Amsterdam Netherlands.Introducing online atlases of the brains of humans, sheep, dolphins, and other animals. A world resource for illustrations of whole brains and stained sections from a great variety of mammals

BrainMaps.org

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BrainMaps.org, launched in May 2005, is an interactive multiresolution next-generation brain atlas that is based on over 20 million megapixels of sub-micron resolution, annotated, scanned images of serial sections of both primate and non-primate brains and that is integrated with a high-speed database for querying and retrieving data about brain structure and function over the internet. Currently featured are complete brain atlas datasets for various species, including Macaca mulatta, Chlorocebus aethiops, Felis catus, Mus musculus, Rattus norvegicus, and Tyto alba.

Brain-CODE

Brain-Centre for Ontario Data Exploration

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Brain-CODE is a large-scale informatics platform that manages the acquisition and storage of multidimensional data collected from participants with a variety of brain disorders.

Brain Transcriptome Database

BrainTx

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The Brain Transcriptome Database (BrainTx) project aims to create an integrated platform to visualize and analyze our original transcriptome data and publicly accessible transcriptome data related to the genetics that underlie the development, function, and dysfunction stages and states of the brain.

NEMAR

NeuroElectroMagnetic data Archive and tools Resource

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An open access data, tools, and compute resource for assessing and processing human NeuroElectroMagnetic data shared by its authors thru OpenNeuro.org.

Open Data Commons for Traumatic Brain Injury

ODC-TBI

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ODC-TBI is a community platform to Share Data, Publish Data with a DOI, and get Citations. Advancing Traumatic Brain Injury research through sharing of data from basic and clinical research.

Comparative Mammalian Brain Collections

brainmuseum

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The Comparative Mammalian Brain Collection web site provides site visitors with images and information from several of the world's largest collections of well-preserved, sectioned and stained brains of mammals, principally those at the University of Wisconsin-Madison and Michigan State University. These collections are currently being consolidated into a central repository at the National Museum of Health and Medicine at the Armed Forces Institute of Pathology in Washington, DC. The collections have been a century in the making and represent the efforts of dozens of skilled scientists. Their colocation at a single facility will represent a national and international center for comparative brain study of the actual specimens. The centralized web site offers many kinds of access to the information contained in the specimens, for use by students and researchers worldwide.

Brain Image Library

BIL

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Brain Image Library (BIL) is an NIH-funded public resource serving the neuroscience community by providing a persistent centralized repository for brain microscopy data. Data scope of the BIL archive includes whole brain microscopy image datasets and their accompanying secondary data such as neuron morphologies, targeted microscope-enabled experiments including connectivity between cells and spatial transcriptomics, and other historical collections of value to the community. The BIL Analysis Ecosystem provides an integrated computational and visualization system to explore, visualize, and access BIL data without having to download it.

Virtual Fly Brain

VFB

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Virtual Fly Brain (VFB) - an interactive tool for neurobiologists to explore the detailed neuroanatomy, neuron connectivity and gene expression of the Drosophila melanogaster CNS.

Pediatric MRI Data Repository

PedsMRI

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<<<!!!<<< integrated in https://www.re3data.org/repository/r3d100012653 >>>!!!>>>

Federal Interagency Traumatic Brain Injury Research Informatics System

FITBIR

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The Federal Interagency Traumatic Brain Injury Research (FITBIR) informatics system was developed to share data across the entire TBI research field and to facilitate collaboration between laboratories, as well as interconnectivity with other informatics platforms. Sharing data, methodologies, and associated tools, rather than summaries or interpretations of this information, can accelerate research progress by allowing re-analysis of data, as well as re-aggregation, integration, and rigorous comparison with other data, tools, and methods. This community-wide sharing requires common data definitions and standards, as well as comprehensive and coherent informatics approaches.

Parkinson Disease Mutation Database

PDmutDB

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<<<!!!<<< This repository is no longer available. >>>!!!>>>

SumsDB

Surface management system database

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<<!! checked 20.03.2017 SumsDB was offline; for more information and archive see http://brainvis.wustl.edu/sumsdb/ >> SumsDB (the Surface Management System DataBase) is a repository of brain-mapping data (surfaces & volumes; structural & functional data) from many laboratories.

NeuroElectro

organizing information on cellular neurophysiology

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The goal of the NeuroElectro Project is to extract information about the electrophysiological properties (e.g. resting membrane potentials and membrane time constants) of diverse neuron types from the existing literature and place it into a centralized database.

CCF

Connectome Coordination Facility

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The Connectome Coordination Facility (CCF) houses and distributes public research data for a series of studies that focus on the connections within the human brain. These are known as Human Connectome Projects. he Connectome Coordination Facility (CCF) was chartered to help coordinate myriad research projects, harmonize their data, and facilitate the dissemination of results.

Brainlife

brain life

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>>>!!!<<< duplicate >>>!!!<<< see https://www.re3data.org/repository/r3d100012397

brainlife

brainlife.io

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Brainlife promotes engagement and education in reproducible neuroscience. We do this by providing an online platform where users can publish code (Apps), Data, and make it "alive" by integragrate various HPC and cloud computing resources to run those Apps. Brainlife also provide mechanisms to publish all research assets associated with a scientific project (data and analyses) embedded in a cloud computing environment and referenced by a single digital-object-identifier (DOI). The platform is unique because of its focus on supporting scientific reproducibility beyond open code and open data, by providing fundamental smart mechanisms for what we refer to as “Open Services.”

National Eye Institute Data Commons

NEI Data Commons

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A central source for NEI biomedical digital objects including data sets, software and analytical workflow, metadata, standards, publications and more.

Canadian Open Neuroscience Platform Portal

CONP

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The CONP portal is a web interface for the Canadian Open Neuroscience Platform (CONP) to facilitate open science in the neuroscience community. CONP simplifies global researcher access and sharing of datasets and tools. The portal internalizes the cycle of a typical research project: starting with data acquisition, followed by processing using already existing/published tools, and ultimately publication of the obtained results including a link to the original dataset. From more information on CONP, please visit https://conp.ca

Mindboggle-101

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The Mindboggle-101 data consist of three data sets: (1) individually labeled human brain surfaces and volumes, (2) templates (unlabeled images combining the individual brains, used for registration), and (3) atlases (anatomical labels combining the individual brains, used for labeling).

Alzheimer Disease & Frontotemporal Dementia Mutation Database

AD & FTD Mutation Database

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<<<!!!<<< This repository is no longer available. >>>!!!>>>

OHSU Digital Commons

OHSU Digital Collections

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OHSU Digital Commons is a repository for the scholarly and creative work of Oregon Health & Science University. Developed by the OHSU Library, Digital Commons provides the university community with a platform for publishing and accessing content produced by students, faculty, and staff. OHSU Digital Commons documents the history and growth of the university, as well as current progress in education, research, and health care.

Mouse Phenome Database

MPD

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The Mouse Phenome Database (MPD; phenome.jax.org) has characterizations of hundreds of strains of laboratory mice to facilitate translational discoveries and to assist in selection of strains for experimental studies.

National Institute of Mental Health Data Archive

NIMH Data Archive

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The National Institute of Mental Health Data Archive (NDA) makes available human subjects data collected from hundreds of research projects across many scientific domains. The NDA provides infrastructure for sharing research data, tools, methods, and analyses enabling collaborative science and discovery. De-identified human subjects data, harmonized to a common standard, are available to qualified researchers. Summary data is available to all. The primary point of entry to the NDA is currently through the National Database for Autism Research (NDAR) website, which serves the autism research community. All NDA repositories can be accessed through this website for data contribution and querying with other scientific communities, allowing for aggregation and secondary analysis of data.