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Found 33 result(s)

World Data System

International Council for Science World Data System

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The Prototype Data Portal allows to retrieve Data from World Data System (WDS) members. WDS ensures the long-term stewardship and provision of quality-assessed data and data services to the international science community and other stakeholders

Life Science Database Archive

LSDB Archive

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The Life Science Database Archive maintains and stores the datasets generated by life scientists in Japan in a long-term and stable state as national public goods. The Archive makes it easier for many people to search datasets by metadata (description of datasets) in a unified format, and to access and download the datasets with clear terms of use. In addition, the Archive provides datasets in forms friendly to different types of users in public and private institutions, and thereby supports further contribution of each research to life science.

J-STAGE Data

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J-STAGE Data is a data repository developed and managed by the Japan Science and Technology Agency (JST). J-STAGE Data supports the publication and distribution of data related to J-STAGE articles with the aim of contributing to the promotion of open science in Japan. Journals published on J-STAGE can use J-STAGE Data to publish data related to their own articles. DOI is automatically assigned to the data published in J-STAGE Data, and data is distributed worldwide as open access (anyone can access it for free, and the conditions for secondary use are clarified state), so anyone can use data under the conditions specified by the copyright holder, such as citing, sharing, and reusing.

CURATOR

Chiba University Repository for Access To Outcomes from Research

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CURATOR (Chiba University's Repository for Access to Outcomes from Research) captures, preserves and makes publicly available intellectual digital materials from research activities on Chiba University campuses, including peer-reviewed articles, theses, preprints, statistical and experimental data, course materials and softwares. CURATOR is intended to function as the portal for the outcomes from Chiba University's research activities. The University Library is responsible for building and operating CURATOR under the guidance of the Faculty Committee for Improved Scholarly Information Availability, which commissioned by the Library Board of Faculty Representatives to systematically promote and arrange disseminative activities by the University.

Autophagy Database

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The goal of the Autophagy Database is to provide up-to-date relevant information including protein structure data to researchers of autophagy, and to disseminate important findings to a wider audience so that their ramifications can be appreciated. For this purpose, we strive to make the database to contain as much pertinent information as possible and to make the contents freely available in a user-friendly format.

Plant Organelles Database 3

PODB3

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<<<!!!<<< This repository is no longer available. >>>!!!>>> The Plant Organelles Database Version 3 (PODB3) is a specialized database project to promote a comprehensive understanding of organelle dynamics, including organelle function, biogenesis, differentiation, movement, and interactions with other organelles. This database consists of 6 individual parts, 'The Electron Micrograph Database', 'The Perceptive Organelles Database', 'The Organelles Movie Database', 'The Organellome Database', 'The Functional Analysis Database', and 'External Links to other databases and Web pages'. All the data and protocols in these databases are populated by direct submission of experimentally determined data from plant researchers.

Xanthobase

Xanthomonas oryzae pv. oryzae genome database

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<<<!!!<<< The repository is no longer available. No known URL could be resolved successfully. >>>!!!>>>

Research Institute for Sustainable Humanosphere databases

RISH databases

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Various information, such as xylarium data with wood specimens collected since 1944, atmospheric observation data using the MU radar and other instruments, space-plasma data observed with GEOTAIL satellite, are now combined as Database of Humanosphere and served for public use. Proposals for scientific and technological use are always welcome.

Peek

京都大学デジタルアーカイブシステム

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“Peek” is a digital archive system to provide access to digitized data of Research Resource Archive, Kyoto University (KURRA). It includes various materials that were made within educational and research activities in Kyoto University. A central feature of KURRA is that it treats materials other than books and specimens: photographs, films, recordings, field books, records of research meetings, lecture notes, and manuscripts, from primary sources.

Pig Expression Data Explorer

PEDE

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The Pig Expression Data Explorer (PEDE) database system stores full-length cDNA libraries of swine data accesible via keyword and ID searches. Data is publically available, and may specifically interest genetic researchers interested in disease sucsceptibly, and major and minor porcine specific antigens.

National Institute of Polar Research Science Database

Polar Data Center Science Database

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The Polar Data Center (PDC) manages the Science Database among other repositories for Japanese polar research. The Science Database is the destination repository for all Japanese Antarctic Research Expedition (JARE) data as well as the Japanese contribution to the International Polar Year (IPY) 2007-2008. Metadata are in English and Japanese, and metadata records are shared with the Global Change Master Directory.

RIKEN Bioresource Research Center

RIKEN BRC

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Bioresources, often referred to as biological resources, are essential experimental research materials for life science and bioindustry. Under the three principles of “Trust”, “Sustainability” and “Leadership”, RIKEN BRC is committed to receiving deposition/donation of bioresources from the research community, confirming the authenticity of bioresources by rigorous quality examination, preserving, and distributing them back to the research community. f you wish to search quickly or to search multiple bioresources (mouse, cell, plant, microorganism, gene) simultaneously, we recommend to search from the Top Page. At the Top page, bioresource search and Google-based site search are available.

JaLTER MetaCat Service

JaLTER Database Systems

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The vision of the JaLTER is to provide scientific knowledge which contributes to conservation, advancement and sustainability of environment, ecosystem services, productivity and biodiversity for a society by conducting long-term and interdisciplinary research in ecological science including human dimensions. The JaLTER is closely linked with the International Long-Term Ecological Research Network (ILTER Network).

Social Science Japan Data Archive

SSJ Data Archive

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The Social Science Japan Data Archive (SSJDA) collects, maintains, and provides access to the academic community, a vast archive of social science data (quantitative data obtained from social surveys) for secondary analyses.

ADS

Arctic Data archive System

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The arctic data archive system (ADS) collects observation data and modeling products obtained by various Japanese research projects and gives researchers to access the results. By centrally managing a wide variety of Arctic observation data, we promote the use of data across multiple disciplines. Researchers use these integrated databases to clarify the mechanisms of environmental change in the atmosphere, ocean, land-surface and cryosphere. That ADS will be provide an opportunity of collaboration between modelers and field scientists, can be expected.

FANTOM

FANTOM DB

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FANTOM stands for 'Functional Annotation of the Mammalian Genome' and is the name of an international research consortium organized by the RIKEN Omics Science Center. The FANTOM5 project aims to build a full understanding of transcriptional regulation in a human system by generating transcriptional regulatory networks that define every human cell type.

REFOLDdb

including: REFOLD

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REFOLD has merged to REFOLDdb. REFOLDdb is a unique database for the life sciences research community, providing annotated information for designing new refolding protocols and customizing existing methodologies. We envisage that this resource will find wide utility across broad disciplines that rely on the production of pure, active, recombinant proteins. Furthermore, the database also provides a useful overview of the recent trends and statistics in refolding technology development.We based our resource on the existing REFOLD database, which has not been updated since 2009. We redesigned the data format to be more concise, allowing consistent representations among data entries compared with the original REFOLD database. The remodeled data architecture enhances the search efficiency and improves the sustainability of the database. After an exhaustive literature search we added experimental refolding protocols from reports published 2009 to early 2017. In addition to this new data, we fully converted and integrated existing REFOLD data into our new resource.

jPOSTrepo

Japan ProteOme STandard Repository/Database

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jPOSTrepo (Japan ProteOme STandard Repository) is a repository of sharing MS raw/processed data. It consists of a high-speed file upload process, flexible file management system and easy-to-use interfaces. Users can release their "raw/processed" data via this site with a unique identifier number for the paper publication. Users also can suspend (or "embargo") their data until their paper is published. The file transfer from users’ computer to our repository server is very fast (roughly ten times faster than usual file transfer) and uses only web browsers – it does not require installing any additional software.

PDBj

Protein Data Bank Japan

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PDBj (Protein Data Bank Japan) provides a centralized PDB archive of macromolecular structures, integrated tools for data retrieval, visualization, and functional characterization. PDBj is supported by JST-NBDC and Osaka University.

DRA

DDBJ Sequence Read Archive

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DDBJ Sequence Read Archive (DRA) is the public archive of high throughput sequencing data. DRA stores raw sequencing data and alignment information to enhance reproducibility and facilitate new discoveries through data analysis. DRA is a member of the International Nucleotide Sequence Database Collaboration (INSDC) and archiving the data in a close collaboration with NCBI Sequence Read Archive (SRA) and EBI Sequence Read Archive (ERA).

University Hospital Medical Information Network Individual Case Data Repository

UMIN-CTR

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The UMIN case data repository system was implemented by adding a function to the UMIN Clinical Trials Registry System. The aim of this system is to keep anonymized case data from clinical research conducted by individual researchers at the UMIN center, and to guarantee the content of the data to third parties. This system enables other researchers to inspect case data or to repeat statistical analyses

Japanese Genotype-phenotype Archive

JGA

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The Japanese Genotype-phenotype Archive (JGA) is a service for permanent archiving and sharing of all types of individual-level genetic and de-identified phenotypic data resulting from biomedical research projects. The JGA contains exclusive data collected from individuals whose consent agreements authorize data release only for specific research use or to bona fide researchers. Strict protocols govern how information is managed, stored and distributed by the JGA. Once processed, all data are encrypted. Users can contact the JGA team from here. JGA services are provided in collaboration with National Bioscience Database Center (NBDC) of Japan Science and Technology Agency.

ComBase

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ComBase is a resource for quantitative and predictive food microbiology. ComBase includes a database of observed microbial responses to a variety of food-related environments and a collection of predictive models.

AlgaeBase

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AlgaeBase is a database of information on algae that includes terrestrial, marine and freshwater organisms. At present, the data for the marine algae, particularly seaweeds, are the most complete.

GlyTouCan

International Glycan Repository

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GlyTouCan is the international glycan structure repository. This repository is a freely available, uncurated registry for glycan structures that assigns globally unique accession numbers to any glycan independent of the level of information provided by the experimental method used to identify the structure(s). Any glycan structure, ranging in resolution from monosaccharide composition to fully defined structures can be registered as long as there are no inconsistencies in the structure.