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Found 46 result(s)

Canadian Poisonous Plants Information System

Système canadien d'information sur les plantes toxiques

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!!! <<< the repository is offline >>> !!! The Canadian Poisonous Plants Information System presents data on plants that cause poisoning in livestock, pets, and humans. The plants include native, introduced, and cultivated outdoor plants as well as indoor plants that are found in Canada. Some food and herbal plants that may cause potential poisoning problems are also included.

MetaCrop

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MetaCrop is a database that summarizes diverse information about metabolic pathways in crop plants and allows automatic export of information for the creation of detailed metabolic models. MetaCrop is a database that contains manually curated, highly detailed information about metabolic pathways in crop plants, including location information, transport processes and reaction kinetics.

Ensembl Plants

e!EnsemblPlants

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EnsemblPlants is a genome-centric portal for plant species. Ensembl Plants is developed in coordination with other plant genomics and bioinformatics groups via the EBI's role in the transPLANT consortium.

Canadensys repository

Database of Vascular Plants of Canada

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Biological collections are replete with taxonomic, geographic, temporal, numerical, and historical information. This information is crucial for understanding and properly managing biodiversity and ecosystems, but is often difficult to access. Canadensys, operated from the Université de Montréal Biodiversity Centre, is a Canada-wide effort to unlock the biodiversity information held in biological collections.

IUCN Red List of Threatened Species

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The IUCN Red List of Threatened Species provides taxonomic, conservation status and distribution data on plants and animals that are critically endangered, endangered and vulnerable. Data are available in Esri File Geodatabase format, Esri Shapefile format, and Excel format.

NCBI Genome

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<<<!!!<<< Effective May 2024, NCBI's Genome resource will no longer be available. NCBI Genome data can now be found on the NCBI Datasets taxonomy pages. https://www.re3data.org/repository/r3d100014298 >>>!!!>>> The Genome database contains annotations and analysis of eukaryotic and prokaryotic genomes, as well as tools that allow users to compare genomes and gene sequences from humans, microbes, plants, viruses and organelles. Users can browse by organism, and view genome maps and protein clusters.

World Data Center for Renewable Resources and Environment

WDC-RRE

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The WDC is concerned with the collection, management, distribution and utilization of data from Chinese provinces, autonomous regions and counties,including: Resource data:management,distribution and utlilzation of land, water, climate, forest, grassland, minerals, energy, etc. Environmental data:pollution,environmental quality, change, natural disasters,soli erosion, etc. Biological resources:animals, plants,wildlife Social economy:agriculture, industry, transport, commerce,infrastructure,etc. Population and labor Geographic background data on scales of 1:4M,1:1M, 1:(1/2)M, 1:2500, etc.

AgBase

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AgBase is a curated, open-source, Web-accessible resource for functional analysis of agricultural plant and animal gene products. Our long-term goal is to serve the needs of the agricultural research communities by facilitating post-genome biology for agriculture researchers and for those researchers primarily using agricultural species as biomedical models.

MORPHYLL

Database for acquisition of ecophysiologically relevant morphometric data of fossil leaves

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The database MORPHYLL contains quantitative and qualitative morphometric data of fossil angiosperm leaves from the Paleogene. The data are compiled from different fossil sites housed in various European Natural History Museums.

Ensembl Genomes

e!EnsemblGenomes

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The Ensembl genome annotation system, developed jointly by the EBI and the Wellcome Trust Sanger Institute, has been used for the annotation, analysis and display of vertebrate genomes since 2000. Since 2009, the Ensembl site has been complemented by the creation of five new sites, for bacteria, protists, fungi, plants and invertebrate metazoa, enabling users to use a single collection of (interactive and programatic) interfaces for accessing and comparing genome-scale data from species of scientific interest from across the taxonomy. In each domain, we aim to bring the integrative power of Ensembl tools for comparative analysis, data mining and visualisation across genomes of scientific interest, working in collaboration with scientific communities to improve and deepen genome annotation and interpretation.

RADaR - Digital Repository of Archived Publications of the Institute for Biological Research “Siniša Stanković”

РАДаР - Репозиторијум Архивираних Дигиталних Радова Института за биолошка истраживања „Синиша Станковић”

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RADaR - Digital Repository of Archived Publications of the Institute for Biological Research “Siniša Stanković” is the institutional digital repository of the Institute for Biological Research “Siniša Stanković” – National Institute of Republic of Serbia, University of Belgrade. The aim of the repository is to provide open access to publications and other research outputs resulting from the projects implemented by the Institute for Biological Research “Siniša Stanković”. The repository uses a DSpace-based software platform developed and maintained by the Belgrade University Computer Centre (RCUB).

Encyclopedia of Life

eol

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Our knowledge of the many life-forms on Earth - of animals, plants, fungi, protists and bacteria - is scattered around the world in books, journals, databases, websites, specimen collections, and in the minds of people everywhere. Imagine what it would mean if this information could be gathered together and made available to everyone – anywhere – at a moment’s notice. This dream is becoming a reality through the Encyclopedia of Life.

PMN

Plant Metabolic Network

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The Plant Metabolic Network (PMN) provides a broad network of plant metabolic pathway databases that contain curated information from the literature and computational analyses about the genes, enzymes, compounds, reactions, and pathways involved in primary and secondary metabolism in plants. The PMN currently houses one multi-species reference database called PlantCyc and 22 species/taxon-specific databases.

International Plant Names Index

IPNI

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The International Plant Names Index (IPNI) is a database of the names and associated basic bibliographical details of seed plants, ferns and lycophytes. Its goal is to eliminate the need for repeated reference to primary sources for basic bibliographic information about plant names. The data are freely available and are gradually being standardized and checked. IPNI is a dynamic resource, depending on direct contributions by all members of the botanical community. IPNI is the product of a collaboration between The Royal Botanic Gardens, Kew, The Harvard University Herbaria, and the Australian National Herbarium.

PLEXdb

Plant Expression Database

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<<<!!!<<< 08.08.2019: Plexdb is no longer online, URLold: http://www.plexdb.org/index.php >>>!!!>>> >>>>!!!! <<<< 13.12.2018: PLEXdb is now a static site after funding stopped from NSF. We have stopped registration of new users; but past users who have data can login when needed and interact with the site. You can download data using the authentication provided at the download page. >>>>!!!!<<<< PLEXdb is a unified gene expression resource for plants and plant pathogens. PLEXdb is a genotype to phenotype, hypothesis building information warehouse, leveraging highly parallel expression data with seamless portals to related genetic, physical, and pathway data.

NatureServe

NatureServe network

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NatureServe and its network of member programs are a leading source for reliable scientific information about species and ecosystems of the Western Hemisphere. This site serves as a portal for accessing several types of publicly available biodiversity data.

Manaaki Whenua - Landcare Research Data Store

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The Landcare Research DataStore ('the DataStore') is the general data catalogue and repository for Environmental Research Data from Landcare Research. Much of Landcare Research’s research data is available through specific web pages, but many datasets sit outside these areas. This data repository provides a mechanism for our staff to deposit and document this wider range of datasets so that they may be discovered and potentially re-used.

TERN Data Discovery Portal

TDDP

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The TERN Data Discovery Portal (TDDP) is a gateway to search and access all the datasets published by the Australian Terrestrial Ecosystem Research Network. In the TERN data discovery portal, users can conduct textual and graphical searches on the metadata catalogue using a web interface with temporal, spatial, and eco science related controlled vocabulary keywords. Requests to download data discovered through different data services associated with TERN. Downloading, using and sharing data will be subjected to the TERN data licensing framework (https://www.tern.org.au/datalicence/).

British Antarctic Survey

BAS

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British Antarctic Survey (BAS) has, for over 60 years, undertaken the majority of Britain's scientific research on and around the Antarctic continent. Atmospheric, biosphere, cryosphere, geosphere, hydrosphere, and Sun-Earth interactions metadata and data are available. Geographic information and collections are highlighted as well. Information and mapping services include a Discovery Metadata System, Data Access System, the Antarctic Digital Database (ADD), Geophysics Data Portal (BAS-GDP), ICEMAR, a fossil database, and the Antarctic Plant Database.

UCSD Metabolomics Workbench

Metabolomics Workbench

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With the creation of the Metabolomics Data Repository managed by Data Repository and Coordination Center (DRCC), the NIH acknowledges the importance of data sharing for metabolomics. Metabolomics represents the systematic study of low molecular weight molecules found in a biological sample, providing a "snapshot" of the current and actual state of the cell or organism at a specific point in time. Thus, the metabolome represents the functional activity of biological systems. As with other ‘omics’, metabolites are conserved across animals, plants and microbial species, facilitating the extrapolation of research findings in laboratory animals to humans. Common technologies for measuring the metabolome include mass spectrometry (MS) and nuclear magnetic resonance spectroscopy (NMR), which can measure hundreds to thousands of unique chemical entities. Data sharing in metabolomics will include primary raw data and the biological and analytical meta-data necessary to interpret these data. Through cooperation between investigators, metabolomics laboratories and data coordinating centers, these data sets should provide a rich resource for the research community to enhance preclinical, clinical and translational research.

India Biodiversity Portal

IBP

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The India Biodiversity Portal is an educational tool to help educate the citizens of India on India's biodiversity. The IBP has multiple overlapping databases of images and scientific information about the variety of animals, plants, and environments found in India. These images and information can also be accessed via the IBP's maps and checklists features that encourage pursuit of ecological education for all ages.

Plant and Fungal Carbohydrate Structure Database

PFCSDB

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<<<!!!<<< Bacterial (BCSDB) and Plant&Fungal (PFCSDB) carbohydrate structure databases have been merged into a single database, CSDB >>>!!!>>> This database is aimed at provision of structural, bibliographic, taxonomic and related information on plant and fungal carbohydrate structures. The main source of data is a retrospective literature analysis. About 4000 records were imported from CCSD (Carbbank, University of Georgia, Athens, plus NMR data from corresponding publications; structures published before 1995) with subsequent manual curation and approval. The scope is "plant and fungal carbohydrates" and is expected to cover nearly all structures of this class published until 2013. Plant and fungal means that a structure has been found in plants or fungi or obtained by modification of those found in these domains. Carohydrate means a structure composed of any residues linked by glycosidic, ester, amidic, ketal, phospho- or sulpho-diester bonds, in which at least one residue is a sugar or its derivative.

Ensembl Fungi

e!EnsemblFungi

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EnsemblFungi is a genome-centric portal for fungal species. It is a project to maintain annotation on selected genomes.

AEKOS Data Portal

Advanced Ecological and Knowledge Observation System Data Portal

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TERN's AEKOS data portal is the original gateway to Australian ecology data. It is a ‘data and research methods’ data portal for Australia’s land-dwelling plants, animals and their environments. The primary focus of data content is raw co-located ‘species and environment’ ecological survey data that has been collected at the ‘plot’ level to describe biodiversity, its patterns and ecological processes. It is openly accessible with standard discovery metadata and user-oriented, contextual metadata critical for data reuse. Our services support the ecosystem science community, land managers and governments seeking to publish under COPE publishing ethics and the FAIR data publishing principles. AEKOS is registered with Thomson & Reuters Data Citation Index and is a recommended repository of Nature Publishing’s Scientific Data. There are currently 97,037 sites covering mostly plant biodiversity and co-located environmental data of Australia. The AEKOS initiative is supported by TERN (tern.org.au), hosted by The University of Adelaide and funded by the Australian Government’s National Research Infrastructure for Australia.

Open Tree of Life

Tree of Life - Evolution

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The tree of life links all biodiversity through a shared evolutionary history. This project will produce the first online, comprehensive first-draft tree of all 1.8 million named species, accessible to both the public and scientific communities. Assembly of the tree will incorporate previously-published results, with strong collaborations between computational and empirical biologists to develop, test and improve methods of data synthesis. This initial tree of life will not be static; instead, we will develop tools for scientists to update and revise the tree as new data come in. Early release of the tree and tools will motivate data sharing and facilitate ongoing synthesis of knowledge.