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Found 54 result(s)

SIMBAD Astronomical Database

Set of Identifications, Measurements, and Bibliography for Astronomical Data

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SIMBAD astronomical database is the world reference database for the identification of astronomical objects and provides basic data, cross-identifications, bibliography and measurements for astronomical objects outside the solar system. Using VizieR, the catalogue service for the CDS reference collection of astronomical catalogues and tables published in academic journals and the Aladin interactive software sky atlas for access, visualization and analysis of astronomical images, surveys, catalogues, databases and related data. Simbad bibliographic survey began in 1950 for stars (at least bright stars) and in 1983 for all other objects (outside the solar system)

Pennsieve Discover

formerly: Blackfynn Discover

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The Pennsieve platform is a cloud-based scientific data management platform focused on integrating complex datasets, fostering collaboration and publishing scientific data according to all FAIR principles of data sharing. The platform is developed to enable individual labs, consortiums, or inter-institutional projects to manage, share and curate data in a secure cloud-based environment and to integrate complex metadata associated with scientific files into a high-quality interconnected data ecosystem. The platform is used as the backend for a number of public repositories including the NIH SPARC Portal and Pennsieve Discover repositories. It supports flexible metadata schemas and a large number of scientific file-formats and modalities.

InnateDB

A Knowlede Resource for Innate Immunity Interactions & Pathways

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InnateDB is a publicly available database of the genes, proteins, experimentally-verified interactions and signaling pathways involved in the innate immune response of humans, mice and bovines to microbial infection. The database captures an improved coverage of the innate immunity interactome by integrating known interactions and pathways from major public databases together with manually-curated data into a centralised resource. The database can be mined as a knowledgebase or used with our integrated bioinformatics and visualization tools for the systems level analysis of the innate immune response.

Social Data Repository (RDS)

Repozytorium Danych Społecznych (RDS)

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The purpose of the Social Data Repository (RDS) is to make available in the Internet social data, consisting of data sets and accompanying technical or methodological documentation. The use of Repository is open for everyone. The repository is operated by the University of Warsaw (Interdisciplinary Centre for Mathematical and Computational Modelling, University of Warsaw). Individual collections in the Social Data Repository are subject to editorial review by University of Warsaw or collection administrators, under separate rules for a given collection. In particular, the supervising editor for the collection “Archive of Quantitative Social Data” is the Team of the Archive of Quantitative Social Data.

GigaDB

GigaScience Database

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GigaDB primarily serves as a repository to host data and tools associated with articles published by GigaScience Press; GigaScience and GigaByte (both are online, open-access journals). GigaDB defines a dataset as a group of files (e.g., sequencing data, analyses, imaging files, software programs) that are related to and support a unit-of-work (article or study). GigaDB allows the integration of manuscript publication with supporting data and tools.

Ensembl Bacteria

e!EnsemblBacteria

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This site provides access to complete, annotated genomes from bacteria and archaea (present in the European Nucleotide Archive) through the Ensembl graphical user interface (genome browser). Ensembl Bacteria contains genomes from annotated INSDC records that are loaded into Ensembl multi-species databases, using the INSDC annotation import pipeline.

KNB Data Repository

Knowledge Network for Biocomplexity

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The KNB Data Repository is an international repository intended to facilitate ecological, environmental and earth science research in the broadest senses. For scientists, the KNB Data Repository is an efficient way to share, discover, access and interpret complex ecological, environmental, earth science, and sociological data and the software used to create and manage those data. Due to rich contextual information provided with data in the KNB, scientists are able to integrate and analyze data with less effort. The data originate from a highly-distributed set of field stations, laboratories, research sites, and individual researchers. The KNB supports rich, detailed metadata to promote data discovery as well as automated and manual integration of data into new projects. The KNB supports a rich set of modern repository services, including the ability to assign Digital Object Identifiers (DOIs) so data sets can be confidently referenced in any publication, the ability to track the versions of datasets as they evolve through time, and metadata to establish the provenance relationships between source and derived data.

Collaborative Research Centre Transregio 32 Database

TR32DB

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In the framework of the Collaborative Research Centre/Transregio 32 ‘Patterns in Soil-Vegetation-Atmosphere Systems: Monitoring, Modelling, and Data Assimilation’ (CRC/TR32, www.tr32.de), funded by the German Research Foundation from 2007 to 2018, a RDM system was self-designed and implemented. The so-called CRC/TR32 project database (TR32DB, www.tr32db.de) is operating online since early 2008. The TR32DB handles all data including metadata, which are created by the involved project participants from several institutions (e.g. Universities of Cologne, Bonn, Aachen, and the Research Centre Jülich) and research fields (e.g. soil and plant sciences, hydrology, geography, geophysics, meteorology, remote sensing). The data is resulting from several field measurement campaigns, meteorological monitoring, remote sensing, laboratory studies and modelling approaches. Furthermore, outcomes of the scientists such as publications, conference contributions, PhD reports and corresponding images are collected in the TR32DB.

SkyView

SkyView Virtual Observatory

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SkyView is a Virtual Observatory on the Net generating images of any part of the sky at wavelengths in all regimes from Radio to Gamma-Ray.

Pandora

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Pandora is an open data platform devoted to the study of the human story. Data may be deposited from various disciplines and research topics that investigate humans from their early beginnings until present in addition to their environmental context (e.g. archeology, anthropology history, ancient DNA, isotopes, zooarchaeology, archaeobotany, and paleoenvironmental and paleoclimatic studies, etc.). Pandora allows autonomous data communities to self-manage their webspace and community membership. Data communities self-curate their data plus other supporting resources. Datasets may be assigned a new DOI and a schema markup is employed to improve data findability. Pandora also allows for links to datasets stored externally and having previously assigned DOIs. Through this, it becomes possible to establish data networks devoted to specific topics that may combine a mix of datasets stored either within Pandora or externally.

IEDA

Interdisciplinary Earth Data Alliance

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IEDA2 is currently undergoing a website reconstruction and will be back soon. IEDA is a community-based facility that serves to support, sustain, and advance the geosciences by providing data services for observational Geoscience data from the Ocean, Earth, and Polar Sciences. IEDA welcomes and encourages investigators to contribute their data to the IEDA collections so that the data can be discovered and reused by a diverse community now and in the future. The IEDA collections are: EarthChem, Geochron, System for Earth Sample Registration (SESAR), Marine Geoscience Data System (MGDS), and USAP Data Center. Meta-Search provided on the portal through IEDA Data Browser http://www.iedadata.org/databrowser .

DATA.GOV.UK

Opening up Government

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The Government is releasing public data to help people understand how government works and how policies are made. Some of this data is already available, but data.gov.uk brings it together in one searchable website. Making this data easily available means it will be easier for people to make decisions and suggestions about government policies based on detailed information.

OpenKIM

Knowledgebase of Interatomic Models

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OpenKIM is an online suite of open source tools for molecular simulation of materials. These tools help to make molecular simulation more accessible and more reliable. Within OpenKIM, you will find an online resource for standardized testing and long-term warehousing of interatomic models and data, and an application programming interface (API) standard for coupling atomistic simulation codes and interatomic potential subroutines.

Ensembl Fungi

e!EnsemblFungi

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EnsemblFungi is a genome-centric portal for fungal species. It is a project to maintain annotation on selected genomes.

GEOSS Portal

The Global Earth Observation System of Systems Portal

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The GEOSS Portal provides an entry point to access Earth Observation information and services. It will connect to a system of existing portals, addressing the GEO Societal Benefit Areas globally and provide national to regional perspective to achieve synergy and leverage.

Repository for Open Data (RepOD)

Repository for Open Data

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RepOD is a general-purpose repository for open research data, offering all members of the academic community in Poland the possibility to deposit their work. It is intended for scientific data from all disciplines of knowledge and in all formats. The purpose of RepOD is to create a place where research data can be safely stored and openly shared with others.

caArray

Array Data Management System

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>>>!!!<<< caArray Retirement Announcement >>>!!!<<< The National Cancer Institute (NCI) Center for Biomedical Informatics and Information Technology (CBIIT) instance of the caArray database was retired on March 31st, 2015. All publicly-accessible caArray data and annotations will be archived and will remain available via FTP download https://wiki.nci.nih.gov/x/UYHeDQ and is also available at GEO http://www.ncbi.nlm.nih.gov/geo/ . >>>!!!<<< While NCI will not be able to provide technical support for the caArray software after the retirement, the source code is available on GitHub https://github.com/NCIP/caarray , and we encourage continued community development. Molecular Analysis of Brain Neoplasia (Rembrandt fine-00037) gene expression data has been loaded into ArrayExpress: http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-3073 >>>!!!<<< caArray is an open-source, web and programmatically accessible microarray data management system that supports the annotation of microarray data using MAGE-TAB and web-based forms. Data and annotations may be kept private to the owner, shared with user-defined collaboration groups, or made public. The NCI instance of caArray hosts many cancer-related public datasets available for download.

CfA Dataverses

The Astronomy Dataverse Network

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The Astronomy data repository at Harvard is currently open to all scientific data from astronomical institutions worldwide. Incorporating Astroinformatics of galaxies and quasars Dataverse. The Astronomy Dataverse is connected to the indexing services provided by the SAO/NASA Astrophysical Data Service (ADS).

Ag Data Commons

USDA’s Open Research Data

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Ag Data Commons provides access to a wide variety of open data relevant to agricultural research. We are a centralized repository for data already on the web, as well as for new data being published for the first time. While compliance with the U.S. Federal public access and open data directives is important, we aim to surpass them. Our goal is to foster innovative data re-use, integration, and visualization to support bigger, better science and policy.

Marlin Metadata Catalogue

CSIRO NCMI Information and Data Centre

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The CSIRO National Collections and Marine Infrastructure (NCMI) Information and Data Centre has managed marine data for Australia's government research organisation for over 30 years. They have an enduring archive of marine and climate research data, and regularly publish data (including physical, chemical, bathymetric and biological data) collected on board RV Investigator as part of the Marine National Facility. Data from the MNF is freely and publicly available.

GitHub

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GitHub is the best place to share code with friends, co-workers, classmates, and complete strangers. Over three million people use GitHub to build amazing things together. With the collaborative features of GitHub.com, our desktop and mobile apps, and GitHub Enterprise, it has never been easier for individuals and teams to write better code, faster. Originally founded by Tom Preston-Werner, Chris Wanstrath, and PJ Hyett to simplify sharing code, GitHub has grown into the largest code host in the world.

NASA Exoplanet Archive

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The NASA Exoplanet Archive collects and serves public data to support the search for and characterization of extra-solar planets (exoplanets) and their host stars. The data include published light curves, images, spectra and parameters, and time-series data from surveys that aim to discover transiting exoplanets. Tools are provided to work with the data, particularly the display and analysis of transit data sets from Kepler and CoRoT. All data are validated by the Exoplanet Archive science staff and traced to their sources. The Exoplanet Archive is the U.S. data portal for the CoRoT mission.

Data.gov

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Data.gov increases the ability of the public to easily find, download, and use datasets that are generated and held by the Federal Government. Data.gov provides descriptions of the Federal datasets (metadata), information about how to access the datasets, and tools that leverage government datasets

Macromolecular Xtallography Raw Data Repository

MX-RDR

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Macromolecular Xtallography Raw Data Repository (MX-RDR) is a domain-specific digital repository of crystallographic open research data. The use of Repository is open for everyone.

GNPS: Global Natural Products Social Molecular Networking

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GNPS is a web-based mass spectrometry ecosystem that aims to be an open-access knowledge base for community-wide organization and sharing of raw, processed or identified tandem mass (MS/MS) spectrometry data. GNPS aids in identification and discovery throughout the entire life cycle of data; from initial data acquisition/analysis to post publication.