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Found 99 result(s)

ALEXA

ALEXA-A

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ALEXA is a microarray design platform for 'alternative expression analysis'. This platform facilitates the design of expression arrays for analysis of mRNA isoforms generated from a single locus by the use of alternative transcription initiation, splicing and polyadenylation sites. We use the term 'ALEXA' to describe a collection of novel genomic methods for 'alternative expression' analysis. 'Alternative expression' refers to the identification and quantification of alternative mRNA transcripts produced by alternative transcript initiation, alternative splicing and alternative polyadenylation. This website provides supplementary materials, source code and other downloads for recent publications describing our studies of alternative expression (AE). Most recently we have developed a method, 'ALEXA-Seq' and associated resources for alternative expression analysis by massively parallel RNA sequencing.

Arca Dados

Arca Data

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Arca Data is Fiocruz's official repository for archiving, publishing, disseminating, preserving and sharing digital research data produced by the Fiocruz community or in partnership with other research institutes or bodies, with the aim of promoting new research, ensuring the reproducibility or replicability of existing research and promoting an Open and Citizen Science. Its objective is to stimulate the wide circulation of scientific knowledge, strengthening the institutional commitment to Open Science and free access to health information, in addition to providing transparency and fostering collaboration between researchers, educators, academics, managers and graduate students, to the advancement of knowledge and the creation of solutions that meet the demands of society.

arthistoricum.net@heiDATA

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arthistoricum.net@heiDATA is the research data repository of arthistoricum.net (Specialized Information Service Art - Photography - Design). It provides art historians with the opportunity to permanently publish and archive research data in the field of art history in connection with an open access online publication (e.g. article, ejournal, ebook) hosted by Heidelberg University Library. All research data e.g. images, videos, audio files, tables, graphics etc. receive a DOI (Digital Object Identifier). The data publications can be cited, viewed and permanently linked to as distinct academic output.

BAliBASE

Benchmark Alignment dataBASE

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A collection of high quality multiple sequence alignments for objective, comparative studies of alignment algorithms. The alignments are constructed based on 3D structure superposition and manually refined to ensure alignment of important functional residues. A number of subsets are defined covering many of the most important problems encountered when aligning real sets of proteins. It is specifically designed to serve as an evaluation resource to address all the problems encountered when aligning complete sequences. The first release provided sets of reference alignments dealing with the problems of high variability, unequal repartition and large N/C-terminal extensions and internal insertions. Version 2.0 of the database incorporates three new reference sets of alignments containing structural repeats, trans-membrane sequences and circular permutations to evaluate the accuracy of detection/prediction and alignment of these complex sequences. Within the resource, users can look at a list of all the alignments, download the whole database by ftp, get the "c" program to compare a test alignment with the BAliBASE reference (The source code for the program is freely available), or look at the results of a comparison study of several multiple alignment programs, using BAliBASE reference sets.

Base de Dados Científicos da Universidade Federal do Paraná

BDC Universidade Federal do Paraná

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The Scientific Database of the Federal University of Paraná aims to gather the scientific data used in the researches that were published by the UFPR community in theses, dissertations, journal articles, and other bibliographic materials. BDC joins RDI / UFPR as an innovative service that tracks the worldwide trend in research planning, management, production, organization, storage, dissemination and reuse. The availability of research data contributes to the transparency and optimization of scientific production through the reuse of data sets and the possibility of new analyzes and approaches

BioVel

Biodiversity Virtual e-Laboratory

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<<<!!!<<< This repository is no longer available. >>>!!!>>> BioVeL is a virtual e-laboratory that supports research on biodiversity issues using large amounts of data from cross-disciplinary sources. BioVeL supports the development and use of workflows to process data. It offers the possibility to either use already made workflows or create own. BioVeL workflows are stored in MyExperiment - Biovel Group http://www.myexperiment.org/groups/643/content. They are underpinned by a range of analytical and data processing functions (generally provided as Web Services or R scripts) to support common biodiversity analysis tasks. You can find the Web Services catalogued in the BiodiversityCatalogue.

bonndata

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bonndata is the institutional, FAIR-aligned and curated, cross-disciplinary research data repository for the publication of research data for all researchers at the University of Bonn. The repository is fully embedded into the University IT and Data Center and curated by the Research Data Service Center (https://www.forschungsdaten.uni-bonn.de/en). The software that bonndata is based on is the open source software Dataverse (https://dataverse.org)

brainlife

brainlife.io

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Brainlife promotes engagement and education in reproducible neuroscience. We do this by providing an online platform where users can publish code (Apps), Data, and make it "alive" by integragrate various HPC and cloud computing resources to run those Apps. Brainlife also provide mechanisms to publish all research assets associated with a scientific project (data and analyses) embedded in a cloud computing environment and referenced by a single digital-object-identifier (DOI). The platform is unique because of its focus on supporting scientific reproducibility beyond open code and open data, by providing fundamental smart mechanisms for what we refer to as “Open Services.”

Brainlife

brain life

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>>>!!!<<< duplicate >>>!!!<<< see https://www.re3data.org/repository/r3d100012397

California Digital Library

CDL

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California Digital Library (CDL) seeks to be a catalyst for deeply collaborative solutions providing a rich, intuitive and seamless environment for publishing, sharing and preserving our scholars’ increasingly diverse outputs, as well as for acquiring and accessing information critical to the University of California’s scholarly enterprise. University of California Curation Center (UC3) is the digital curation program within CDL. The mission of UC3 is to provide transformative preservation, curation, and research data management systems, services, and initiatives that sustain and promote open scholarship.

Center for Engineering Strong Motion Data

CESMD

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Strong-motion data of engineering and scientific importance from the United States and other seismically active countries are served through the Center for Engineering Strong Motion Data(CESMD). The CESMD now automatically posts strong-motion data from an increasing number of seismic stations in California within a few minutes following an earthquake as an InternetQuick Report(IQR). As appropriate,IQRs are updated by more comprehensive Internet Data Reports that include reviewed versions of the data and maps showing, for example, the finite fault rupture along with the distribution of recording stations. Automated processing of strong-motion data will be extended to post the strong-motion records of the regional seismic networks of the Advanced National Seismic System (ANSS) outside California.

ChemSynthesis

ChemSynthesis Chemical Database

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ChemSynthesis is a freely accessible database of chemicals. This website contains substances with their synthesis references and physical properties such as melting point, boiling point and density. There are currently more than 40,000 compounds and more than 45,000 synthesis references in the database.

Climate Data Gateway at NCAR

NCAR Climate Data Gateway

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The NCAR Climate Data Gateway provides data discovery and access services for global and regional climate model data, knowledge, and software. The NCAR Climate Data Gateway supports community access to data products from many of NCAR&#039;s community modeling efforts, including the IPCC, PCM, AMPS, CESM, NARCCAP, and NMME activities. Data products are generally open and available, however, download access may require a login.

Code Ocean

CO

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Code Ocean is a cloud-based computational reproducibility platform that provides researchers an easy way to share, discover and run code published in academic journals and conferences.

COEMS Open Data

Continuous Observation of Embedded Multicore Systems Data

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<<<!!!<<< This repository is no longer available. >>>!!!>>>

Community Coordinated Modeling Center

CCMC

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The Community Coordinated Modeling Center (CCMC) is a multi-agency partnership based at the NASA Goddard Space Flight Center in Greenbelt, Maryland and a component of the National Space Weather Program. The CCMC provides, to the international research community, access to modern space science simulations. In addition, the CCMC supports the transition to space weather operations of modern space research models.

Constrained Local UniversE Simulations

CLUES

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The main goal of the CLUES-project is to provide constrained simulations of the local universe designed to be used as a numerical laboratory of the current paradigm. The simulations will be used for unprecedented analysis of the complex dark matter and gasdynamical processes which govern the formation of galaxies. The predictions of these experiments can be easily compared with the detailed observations of our galactic neighborhood. Some of the CLUES data is now publicly available via the CosmoSim database (https://www.cosmosim.org/). This includes AHF halo catalogues from the Box 64, WMAP3 resimulations of the Local Group with 40963 particle resolution.

DANS Data Station Life Sciences

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A domain-specific repository for the Life Sciences, covering the health, medical as well as the green life sciences. The repository services are primarily aimed at the Netherlands, but not exclusively.

DaRUS

Data Repository of the University of Stuttgart

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DaRUS, the data repository of the University of Stuttgart, offers a secure location for research data and codes, be it for the administration of own data, for exchange within a research group, for sharing with selected partners or for publishing.

Data@Lincoln

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Data@Lincoln is the research data repository for Lincoln University (New Zealand). Datasets may stand alone, or may consist of appendices to theses, or figures or other supplementary material to journal articles and other publications.

data_UMR

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data_UMR is the institutional repository of the University of Marburg for research data of all kinds that has been generated in the context of research activities at the University of Marburg.

DataHub Figshare

University of Hong Kong Data Repository

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Provided by the University Libraries, DataHub is the comprehensive institutional repository for research data and scholarly outputs produced by the researchers and students in the University of Hong Kong and their collaborators.

DataRepositoriUM

Repositório de Dados da Universidade do Minho

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Data Repository of the University of Minho. Share, publish and manage data from University of Minho research units.

DataShare: the Open Data Repository of Iowa State University

ISU's Open Data Repository

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Iowa State University’s DataShare is an open access repository for sharing and publishing research data created by Iowa State University scholars and researchers.

datastore by Universität Münster

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datastore is the cross-domain research data repository of the University Münster (Germany). In datastore, scientific members of the University Münster can publish their research data following the FAIR principles, including the assignment of a DOI for each dataset as a persistent identifier.